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The map label for this gene is pilQ [H]

Identifier: 119776501

GI number: 119776501

Start: 3994976

End: 3997033

Strand: Reverse

Name: pilQ [H]

Synonym: Sama_3369

Alternate gene names: 119776501

Gene position: 3997033-3994976 (Counterclockwise)

Preceding gene: 119776502

Following gene: 119776500

Centisome position: 92.82

GC content: 48.45

Gene sequence:

>2058_bases
ATGGAATCTTCTGCCGCGTTCATAACACGCACCAACAAGCCGGGGTTGGCAAAAGCCTTGGTAGGTATTGCGTTGTTTTT
CGGTGTAACCACAGCAGCCGTAGCGGCCAATCGGCTGGTCGATGTTAAATATCACTCGGTGATAGACAGCCAATTGGAAC
TCGAGTTGGTGTTTGAAAACCCCATTGTTGAGCCTGAGATCAATCTCAATGCGACACCGGCTCAAATACTGCTTTCATTT
GATGACAGTATTTCCGGACTGGCGACAAACGCACTGCCAGTTAACCGAGGCGGTGTCACAGAGGTGAATACTCAGCAGCA
GGACTCAGATTTAGTGGTTGGCGTGAATCTGTCCAAGGTACTTCCTTACCAAGGTGCCGTGGTCGGTAACAGCTATCGCT
TAACGGTAAATGATGCGGTGGTTTCCAAAGCCACTGATACCAATTCGTCATCCAGTGCTTACGTTAACGGCATTAAAAAT
ATTGATTTTCGTCGTAACGGTAAGGGTGGCGGCGAGCTTATTGTTCAGCTGAATAACACCAAGGTTGCGGCCAATGTCGA
ACAAATTGGCGCCAAGTTAGAGGTGAAGTTTTTTAACACAGACATTCCAAAAGACATGTTGTATGTCATGGATGTGCAGG
ACTTTGCTACTCCGGTAAAGAGCTTTGAAACTTTTAAGGAAGACTTGGTTACCCGTATTCAGGTCGATATTGGCGGTGAG
TACGAATACAACTACGTTCAGGAAGCCAGTCAGTTCAAACTGTCAATGAACAAGGTTGTACGTCAGGCATCTGTGAAGCA
GGAAAAGAAATATAACGGCAAGACTTTGTCGTTGAATTTCCAAAATATTTCTGTGCGTACCGTGCTGCAGTTAATTGCCG
ACTACAACAACTTCAATCTGGTAACCAGTGATTCGGTTCAGGGCGACATTACCTTGGTTCTGGACGACGTTCCGTGGGAC
CAAGCACTCGATTTAATCCTGAAAACTAAAGGGCTGGATAAACGCATTGAAGGTAACATCCTGATGGTCGCTCCAGCTGA
AGAGCTTGCCGTACGTGAAAGTATGGAACTGCGCAACCAACAGGAAGTGCAGGAGCTGGCGCCACTCTATTCCGAGTACA
TGCAAATCAACTACGCCAAAGCGACTGATATTGCAGAGCTGCTGAAAAGCGAAGGTTCGAGCCTGCTTAGTGATAGAGGT
AGTGTCGCGGTTGATGAGCGCACTAACACTCTGCTGGTTAAAGATACTGCTGAGACGCTGGTAAATGTGCAGCGCATGAT
AGAAGTGCTTGATATCCCAATTCGTCAGGTACTGATAGAATCCCGCATGGTGACCGTGAAGGATAACGTCGCGGAAGACT
TGGGTATCCGTTGGGGGGTCACCGATCAGCAAGGCACCAAGGGGACCTCGGGTTCACTCGAAGGTGCTGAGAGTATTGCT
GGCGGCGTCATTCCGGCCATCAGCGACCGTTTGAATGTTAACTTGCCAGCGCCCACCAATGCCGCCAGTATTGCTTTTCA
CGTCGCAAAACTTGCCGATGGCACCGTATTGGACATGGAGCTAAGTGCATTAGAGCAGGAAAACAAGGGTGAAATTATAG
CAAGCCCGCGTATCACCACCTCGAATCAAAAAGCTGCGTATATCGAGCAGGGTGTTGAAATTCCTTATGTATCAGCCTCT
TCCAGCGGTTCTACGACGGTTGAGTTCAAGAAGGCGGTGCTATCTCTTCGCGTTACGCCGCAAATCACTCCGGATAATCG
AGTTATTCTGGATTTGGAAATCACCCAAGACAGTCGCGGTGAAACAGTAGATACTGCGACCGGCCGCGCTGTGGCAATCG
ATACGCAGCGTATTGGTACTCAAGTGCTGGTAGACAACGGTGAAACCATAGTGCTGGGTGGTATCTACCAGCAAAATCTT
ATCAGCCGCGTGAGCAAGGTTCCGGTCTTGGGTGATATTCCCCTGGTGGGATTCCTGTTCCGCAACACGTCAGATAAAAA
TGAACGTCAGGAACTGCTTATCTTCGTGACGCCTAAAATCGTGACAGAAAAAATCTGA

Upstream 100 bases:

>100_bases
TGAAGTAATAGAATTAATTCCGGACGGTTCCGGCTGCTGGGCAGAGCGCTCAAGCACCCTGGAATTGGCTGGAGAATAAC
CTGCGAAGGATGAGGGAATG

Downstream 100 bases:

>100_bases
TCTTCAGACAGTAAAAGGGCCGGGATAACCGGCCCTTTTGTTTTCAACTCTCGCAGCTTTTCTTGGTTTTGATCTTCTAC
TGACTTGCCTTCCCCACCTT

Product: type IV pilus biogenesis protein PilQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 685; Mature: 685

Protein sequence:

>685_residues
MESSAAFITRTNKPGLAKALVGIALFFGVTTAAVAANRLVDVKYHSVIDSQLELELVFENPIVEPEINLNATPAQILLSF
DDSISGLATNALPVNRGGVTEVNTQQQDSDLVVGVNLSKVLPYQGAVVGNSYRLTVNDAVVSKATDTNSSSSAYVNGIKN
IDFRRNGKGGGELIVQLNNTKVAANVEQIGAKLEVKFFNTDIPKDMLYVMDVQDFATPVKSFETFKEDLVTRIQVDIGGE
YEYNYVQEASQFKLSMNKVVRQASVKQEKKYNGKTLSLNFQNISVRTVLQLIADYNNFNLVTSDSVQGDITLVLDDVPWD
QALDLILKTKGLDKRIEGNILMVAPAEELAVRESMELRNQQEVQELAPLYSEYMQINYAKATDIAELLKSEGSSLLSDRG
SVAVDERTNTLLVKDTAETLVNVQRMIEVLDIPIRQVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIA
GGVIPAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVSAS
SSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETVDTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNL
ISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIVTEKI

Sequences:

>Translated_685_residues
MESSAAFITRTNKPGLAKALVGIALFFGVTTAAVAANRLVDVKYHSVIDSQLELELVFENPIVEPEINLNATPAQILLSF
DDSISGLATNALPVNRGGVTEVNTQQQDSDLVVGVNLSKVLPYQGAVVGNSYRLTVNDAVVSKATDTNSSSSAYVNGIKN
IDFRRNGKGGGELIVQLNNTKVAANVEQIGAKLEVKFFNTDIPKDMLYVMDVQDFATPVKSFETFKEDLVTRIQVDIGGE
YEYNYVQEASQFKLSMNKVVRQASVKQEKKYNGKTLSLNFQNISVRTVLQLIADYNNFNLVTSDSVQGDITLVLDDVPWD
QALDLILKTKGLDKRIEGNILMVAPAEELAVRESMELRNQQEVQELAPLYSEYMQINYAKATDIAELLKSEGSSLLSDRG
SVAVDERTNTLLVKDTAETLVNVQRMIEVLDIPIRQVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIA
GGVIPAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVSAS
SSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETVDTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNL
ISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIVTEKI
>Mature_685_residues
MESSAAFITRTNKPGLAKALVGIALFFGVTTAAVAANRLVDVKYHSVIDSQLELELVFENPIVEPEINLNATPAQILLSF
DDSISGLATNALPVNRGGVTEVNTQQQDSDLVVGVNLSKVLPYQGAVVGNSYRLTVNDAVVSKATDTNSSSSAYVNGIKN
IDFRRNGKGGGELIVQLNNTKVAANVEQIGAKLEVKFFNTDIPKDMLYVMDVQDFATPVKSFETFKEDLVTRIQVDIGGE
YEYNYVQEASQFKLSMNKVVRQASVKQEKKYNGKTLSLNFQNISVRTVLQLIADYNNFNLVTSDSVQGDITLVLDDVPWD
QALDLILKTKGLDKRIEGNILMVAPAEELAVRESMELRNQQEVQELAPLYSEYMQINYAKATDIAELLKSEGSSLLSDRG
SVAVDERTNTLLVKDTAETLVNVQRMIEVLDIPIRQVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIA
GGVIPAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITTSNQKAAYIEQGVEIPYVSAS
SSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETVDTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNL
ISRVSKVPVLGDIPLVGFLFRNTSDKNERQELLIFVTPKIVTEKI

Specific function: Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a "porthole" allowing passage of the fimbrae through the outer membrane [H]

COG id: COG4796

COG function: function code U; Type II secretory pathway, component HofQ

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=414, Percent_Identity=38.4057971014493, Blast_Score=271, Evalue=9e-74,
Organism=Escherichia coli, GI87082242, Length=378, Percent_Identity=30.952380952381, Blast_Score=132, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR013355
- InterPro:   IPR011662
- InterPro:   IPR004846
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]

EC number: NA

Molecular weight: Translated: 74590; Mature: 74590

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESSAAFITRTNKPGLAKALVGIALFFGVTTAAVAANRLVDVKYHSVIDSQLELELVFEN
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCEEEEEEECC
PIVEPEINLNATPAQILLSFDDSISGLATNALPVNRGGVTEVNTQQQDSDLVVGVNLSKV
CCCCCCCCCCCCHHHEEEEECCCCCCCEECCEECCCCCCCCCCCCCCCCCEEEEECHHHH
LPYQGAVVGNSYRLTVNDAVVSKATDTNSSSSAYVNGIKNIDFRRNGKGGGELIVQLNNT
CCCCCEEECCEEEEEEEHHHEECCCCCCCCCCCEECCCCCCCEEECCCCCCEEEEEECCC
KVAANVEQIGAKLEVKFFNTDIPKDMLYVMDVQDFATPVKSFETFKEDLVTRIQVDIGGE
EEEEEHHHCCCEEEEEEECCCCCCHHEEEEECHHHHHHHHHHHHHHHHHHEEEEEEECCC
YEYNYVQEASQFKLSMNKVVRQASVKQEKKYNGKTLSLNFQNISVRTVLQLIADYNNFNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEE
VTSDSVQGDITLVLDDVPWDQALDLILKTKGLDKRIEGNILMVAPAEELAVRESMELRNQ
EECCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCH
QEVQELAPLYSEYMQINYAKATDIAELLKSEGSSLLSDRGSVAVDERTNTLLVKDTAETL
HHHHHHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCEEEEECHHHHH
VNVQRMIEVLDIPIRQVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIA
HHHHHHHHHHCCCHHHHHHHCCEEEEECCHHHHCCCEECCCCCCCCCCCCCCCCCHHHHC
GGVIPAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITT
CCCCHHCCCCEEEECCCCCCHHHHHEEHHHHCCCEEEEEEHHHHCCCCCCCEEECCEEEC
SNQKAAYIEQGVEIPYVSASSSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRG
CCCCHHHHHCCCCCEEEECCCCCCEEHHEEEEEEEEEECCEECCCCEEEEEEEECCCCCC
ETVDTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLF
CEEECCCCCEEEEEHHHCCCEEEEECCCEEEECCHHHHHHHHHHHCCCCCCCCCCEEHEE
RNTSDKNERQELLIFVTPKIVTEKI
ECCCCCCCCEEEEEEECCHHHCCCC
>Mature Secondary Structure
MESSAAFITRTNKPGLAKALVGIALFFGVTTAAVAANRLVDVKYHSVIDSQLELELVFEN
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCEEEEEEECC
PIVEPEINLNATPAQILLSFDDSISGLATNALPVNRGGVTEVNTQQQDSDLVVGVNLSKV
CCCCCCCCCCCCHHHEEEEECCCCCCCEECCEECCCCCCCCCCCCCCCCCEEEEECHHHH
LPYQGAVVGNSYRLTVNDAVVSKATDTNSSSSAYVNGIKNIDFRRNGKGGGELIVQLNNT
CCCCCEEECCEEEEEEEHHHEECCCCCCCCCCCEECCCCCCCEEECCCCCCEEEEEECCC
KVAANVEQIGAKLEVKFFNTDIPKDMLYVMDVQDFATPVKSFETFKEDLVTRIQVDIGGE
EEEEEHHHCCCEEEEEEECCCCCCHHEEEEECHHHHHHHHHHHHHHHHHHEEEEEEECCC
YEYNYVQEASQFKLSMNKVVRQASVKQEKKYNGKTLSLNFQNISVRTVLQLIADYNNFNL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCEE
VTSDSVQGDITLVLDDVPWDQALDLILKTKGLDKRIEGNILMVAPAEELAVRESMELRNQ
EECCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCH
QEVQELAPLYSEYMQINYAKATDIAELLKSEGSSLLSDRGSVAVDERTNTLLVKDTAETL
HHHHHHHHHHHHHHEEECHHHHHHHHHHHHCCCHHHHCCCCEEEECCCCEEEEECHHHHH
VNVQRMIEVLDIPIRQVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIA
HHHHHHHHHHCCCHHHHHHHCCEEEEECCHHHHCCCEECCCCCCCCCCCCCCCCCHHHHC
GGVIPAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITT
CCCCHHCCCCEEEECCCCCCHHHHHEEHHHHCCCEEEEEEHHHHCCCCCCCEEECCEEEC
SNQKAAYIEQGVEIPYVSASSSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRG
CCCCHHHHHCCCCCEEEECCCCCCEEHHEEEEEEEEEECCEECCCCEEEEEEEECCCCCC
ETVDTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLF
CEEECCCCCEEEEEHHHCCCEEEEECCCEEEECCHHHHHHHHHHHCCCCCCCCCCEEHEE
RNTSDKNERQELLIFVTPKIVTEKI
ECCCCCCCCEEEEEEECCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7901733; 10984043 [H]