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The map label for this gene is rpe [H]

Identifier: 119776494

GI number: 119776494

Start: 3989242

End: 3989934

Strand: Reverse

Name: rpe [H]

Synonym: Sama_3362

Alternate gene names: 119776494

Gene position: 3989934-3989242 (Counterclockwise)

Preceding gene: 119776497

Following gene: 119776493

Centisome position: 92.66

GC content: 53.39

Gene sequence:

>693_bases
ATGCCAGAGACTCTGAATATGCGCCCTTACCTGATTGCTCCTTCTATTCTGTCTGCCGATTTCGCCCGTTTGGGGGATGA
CGTTAAAGCTGTATTGGATGCCGGTGCCGATGTGGTTCACTTCGACGTGATGGACAACCACTATGTGCCTAATCTGACCA
TTGGCCCCATGGTGTGTAAAGCGCTGCGTGACTATGGTATTACCGCCGACATCGACGTGCATTTGATGGTTAAGCCGGTG
GACCGCATTATTCCCGATTTCGCCAAGGCGGGAGCCTCTATTATTACCTTCCATCCGGAGGCCTCGGAGCATGTTGATCG
CACCCTGCAGCTTATTCGTGACCACGGATGTAAGGCTGGACTGGTATTTAATCCAGCCACGCCGCTGCACTACCTTGATT
ATGTGATGGATAAGCTGGATGTGATACTGCTGATGTCGGTCAACCCGGGCTTTGGGGGCCAGTCTTTTATCCCTGCGACT
CTCGACAAGCTTAAGCAGGTTCGTGGGCGTATCGATGCCAGTGGCTACGATATTCGCCTCGAAGTGGATGGCGGTGTGAA
AGAAGATAACATTGCTGAAATCGCGGCAGCCGGTGCCGACATGTTTGTGGCAGGCAGTGCCATATTTGGCAAACCGGATT
ACAAGGCCGTTGTTGACCGCATGCGTGCGGAGCTGGCCAAGGTAGCTGGCTGA

Upstream 100 bases:

>100_bases
GGCAGTGAATCGTCCCGTTTGCTGTGTTGGAGGCCATAAAATCGACAGAAAGTGCGGAAAAAAATAGTGAAATCGGATAA
AATACGCGCCCTCTCAACCC

Downstream 100 bases:

>100_bases
TGACACTGATGAATCGTATCCGTGCCATTGCTTTTGATTTGGATGGCACCTTGGTTGACAGTGTGCCGGATCTCGCCGCG
GCCACCAATGACACTCTTCG

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MPETLNMRPYLIAPSILSADFARLGDDVKAVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYGITADIDVHLMVKPV
DRIIPDFAKAGASIITFHPEASEHVDRTLQLIRDHGCKAGLVFNPATPLHYLDYVMDKLDVILLMSVNPGFGGQSFIPAT
LDKLKQVRGRIDASGYDIRLEVDGGVKEDNIAEIAAAGADMFVAGSAIFGKPDYKAVVDRMRAELAKVAG

Sequences:

>Translated_230_residues
MPETLNMRPYLIAPSILSADFARLGDDVKAVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYGITADIDVHLMVKPV
DRIIPDFAKAGASIITFHPEASEHVDRTLQLIRDHGCKAGLVFNPATPLHYLDYVMDKLDVILLMSVNPGFGGQSFIPAT
LDKLKQVRGRIDASGYDIRLEVDGGVKEDNIAEIAAAGADMFVAGSAIFGKPDYKAVVDRMRAELAKVAG
>Mature_229_residues
PETLNMRPYLIAPSILSADFARLGDDVKAVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYGITADIDVHLMVKPVD
RIIPDFAKAGASIITFHPEASEHVDRTLQLIRDHGCKAGLVFNPATPLHYLDYVMDKLDVILLMSVNPGFGGQSFIPATL
DKLKQVRGRIDASGYDIRLEVDGGVKEDNIAEIAAAGADMFVAGSAIFGKPDYKAVVDRMRAELAKVAG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=219, Percent_Identity=39.7260273972603, Blast_Score=160, Evalue=6e-40,
Organism=Homo sapiens, GI219879828, Length=219, Percent_Identity=38.3561643835616, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI24307923, Length=175, Percent_Identity=32.5714285714286, Blast_Score=97, Evalue=8e-21,
Organism=Escherichia coli, GI1789788, Length=223, Percent_Identity=84.7533632286996, Blast_Score=387, Evalue=1e-109,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=38.0710659898477, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1790754, Length=210, Percent_Identity=31.4285714285714, Blast_Score=97, Evalue=9e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=222, Percent_Identity=39.6396396396396, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6322341, Length=229, Percent_Identity=37.5545851528384, Blast_Score=158, Evalue=8e-40,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=39.8104265402844, Blast_Score=155, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24919; Mature: 24788

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPETLNMRPYLIAPSILSADFARLGDDVKAVLDAGADVVHFDVMDNHYVPNLTIGPMVCK
CCCCCCCCCEEECCHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH
ALRDYGITADIDVHLMVKPVDRIIPDFAKAGASIITFHPEASEHVDRTLQLIRDHGCKAG
HHHHCCCEECCEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC
LVFNPATPLHYLDYVMDKLDVILLMSVNPGFGGQSFIPATLDKLKQVRGRIDASGYDIRL
EEECCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
EVDGGVKEDNIAEIAAAGADMFVAGSAIFGKPDYKAVVDRMRAELAKVAG
EECCCCCCCHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PETLNMRPYLIAPSILSADFARLGDDVKAVLDAGADVVHFDVMDNHYVPNLTIGPMVCK
CCCCCCCCEEECCHHHHHHHHHHCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH
ALRDYGITADIDVHLMVKPVDRIIPDFAKAGASIITFHPEASEHVDRTLQLIRDHGCKAG
HHHHCCCEECCEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCC
LVFNPATPLHYLDYVMDKLDVILLMSVNPGFGGQSFIPATLDKLKQVRGRIDASGYDIRL
EEECCCCHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEE
EVDGGVKEDNIAEIAAAGADMFVAGSAIFGKPDYKAVVDRMRAELAKVAG
EECCCCCCCHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]