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The map label for this gene is ybbI [C]

Identifier: 119776479

GI number: 119776479

Start: 3973559

End: 3973993

Strand: Reverse

Name: ybbI [C]

Synonym: Sama_3347

Alternate gene names: 119776479

Gene position: 3973993-3973559 (Counterclockwise)

Preceding gene: 119776481

Following gene: 119776472

Centisome position: 92.29

GC content: 60.23

Gene sequence:

>435_bases
ATGGACATTTCGCAGGTAGCGAAGCAGTCGGGCGTGGCGGCTTCAAGGCTTAGATATTATGAGGAAAAGGGACTTATCCG
CGCCATCGGCCGCGATGGCCTTAAGCGGGTGTTTTCGCCCGGCATTCTGGAGCGCTTGGCCCTGATTGCGTTGGGGCAGT
CGGCGGGGTTCTCGCTGGACGAGATTGCCGGCATGCTCGGCCGTGATGGCAATCCGGAAATAGACAAAGCCAGGCTGGTG
GAAAAGGCTGATGAACTGGATGGGCGCATCAAACGGCTTTGCGCCATGCGCGATGGCCTGAGGCATGCCGCCCAGTGCAG
CGCCCCCAGTTATCTGGAATGCCCCAAGTTTCAGCGCCTGATGCAGCATGCTGCGAAAGCTGACAAAAAGCAGCGCCAGT
CCGGGGCTGCCCGGCAGAACAAGCCCCCACGCTAA

Upstream 100 bases:

>100_bases
ATCAGTATCTGCAGCAAAAGTAGCATTCTTATCTTCCGTCCTTGTGGTTAAATAATCTGCAAGGTACAACTTCAAGTCAA
CTTGAGGTCAAGGGGATGTG

Downstream 100 bases:

>100_bases
CGCCAGCTTGTCTCACGACAGCGTTCGCAACCACGGCAGTCGTAGGCAAGCTGCTTAGAGCCAGTAGCGCGGATAGTGGC
GTTTGGGGTTGGAGGACAGG

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Transcriptional Regulator MerR Family Protein; Redox-Sensitive Transcriptional Activator; Cu(I)-Responsive Transcriptional Regulator; Regulatory Protein; Regulatory Protein MerR; Transcriptional Activator For Superoxide Response; MerR Family Regulatory Protein; MerR-Family Transcriptional Regulator; Transcriptional Activator; SoxR Family Transcriptional Regulator; Transcriptional Regulator Merr Family; MerR Family Regulatory Family; HTH-Type Transcriptional Regulator CueR; Superoxide Response Transcriptional Activator

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MDISQVAKQSGVAASRLRYYEEKGLIRAIGRDGLKRVFSPGILERLALIALGQSAGFSLDEIAGMLGRDGNPEIDKARLV
EKADELDGRIKRLCAMRDGLRHAAQCSAPSYLECPKFQRLMQHAAKADKKQRQSGAARQNKPPR

Sequences:

>Translated_144_residues
MDISQVAKQSGVAASRLRYYEEKGLIRAIGRDGLKRVFSPGILERLALIALGQSAGFSLDEIAGMLGRDGNPEIDKARLV
EKADELDGRIKRLCAMRDGLRHAAQCSAPSYLECPKFQRLMQHAAKADKKQRQSGAARQNKPPR
>Mature_144_residues
MDISQVAKQSGVAASRLRYYEEKGLIRAIGRDGLKRVFSPGILERLALIALGQSAGFSLDEIAGMLGRDGNPEIDKARLV
EKADELDGRIKRLCAMRDGLRHAAQCSAPSYLECPKFQRLMQHAAKADKKQRQSGAARQNKPPR

Specific function: Copper responsive transcription regulator [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786695, Length=126, Percent_Identity=31.7460317460317, Blast_Score=60, Evalue=4e-11,
Organism=Escherichia coli, GI1790498, Length=116, Percent_Identity=37.0689655172414, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15875; Mature: 15875

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDISQVAKQSGVAASRLRYYEEKGLIRAIGRDGLKRVFSPGILERLALIALGQSAGFSLD
CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHH
EIAGMLGRDGNPEIDKARLVEKADELDGRIKRLCAMRDGLRHAAQCSAPSYLECPKFQRL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
MQHAAKADKKQRQSGAARQNKPPR
HHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDISQVAKQSGVAASRLRYYEEKGLIRAIGRDGLKRVFSPGILERLALIALGQSAGFSLD
CCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHH
EIAGMLGRDGNPEIDKARLVEKADELDGRIKRLCAMRDGLRHAAQCSAPSYLECPKFQRL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
MQHAAKADKKQRQSGAARQNKPPR
HHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA