Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776446

Identifier: 119776446

GI number: 119776446

Start: 3944545

End: 3945894

Strand: Reverse

Name: 119776446

Synonym: Sama_3314

Alternate gene names: NA

Gene position: 3945894-3944545 (Counterclockwise)

Preceding gene: 119776447

Following gene: 119776445

Centisome position: 91.63

GC content: 59.48

Gene sequence:

>1350_bases
GTGAAACTGGTGATGGTGCATGGCTGGAGCGTCACAGATACCCGGGTGTATGGGGGCTTGCCTGAGGCGCTGGCTCGCTT
TGCCCCTGAATCGCTGGCGCTGGATATCGAGCACATCTTTCTGGGCCGCTATATCAGCTTCAATGACGAGGTGCGCATTA
CGGATGTGGCGGATGCGTTCGAGCGCGCGAGGCAGGAGCGTTTGCAGGATGAACGCTTTGCCGTAGTGACCCATTCCACC
GGCGCGCCGGTTATCCGCACCTGGCTTGCCCGCTACTATGCTGCATTGCCTCAGGGCGAGCAGGGGCAAAAGGCACTGAA
CCAATGTCCGCTGAGCCACCTGATTATGCTTGCCCCCGCCAACCATGGCTCGGCACTGGCGCAGCTGGGTAAATCCCGCC
TTGGGCGGCTCAAATCCTGGTTTGATGGGGTAGAGCCGGGGCAGCAAATCCTCGACTGGCTGGAGCTGGGCAGCCAGGGG
CAACATCAACTGAGCCGCTACTGGCTCAGCCAGAACCCCGTGGCCGATGGTCTGTATCCCTTTGTGATAAGTGGCGAAAC
CATCGACAGTAACCTCTATGACTTCCTCAACAGTTACACTGCCGAGCCGGGCAGCGATGGTGTCGTTCGCCTCGCCGGCG
CCAATCTCAACTATCGCAGCCTTGAACTTGCCGAAACCCCAACCCTGGACGATACCGGCCGGGCTGAGCTGTCCATCACG
GCCGATGTCATGGCGCCCGCCTGTGGCTTTGAAGTGCTGCCAAGGGCCAGCCACAGCGGCAACAAGCTTGGGATCATGAC
CTCGGTCAATGGTCGCTCGCCAAAGCCCAAACCTGTGGTCAGCCGTATCCTGCAATGTTTGCAGGTGGGGTCGGCCGGGG
ATTACAGCGCCCTTTGCCAGAAAATGGCTGACAGCCGCCCCAGAACCGGCCCGCGCTTTACCCAACTGGTGGTGCGGCTG
TGGGACAACGAAGGTGAGCCCATCCGCGACTTCGATTTTTTGCTGCTGGCAGGGCCTGACTACGACCCCGGTAAGCTGCC
TAAAGGCTTTTTTCAGGACAGACAAAAAAATCAGCGCAGTGGCAATGCCCTGACCCTCTACCTGAACCATGACCGCATGC
TGAAAACCGCCCAAGGCTGCTGGGGTTTTCGCATTATTCCCCGCCCGGACAGGGGGCTTGCTCACTATCGGCAAGTGGAG
TTTCGCTGCGCCGGACACCTTGCCGACTACCTTGTGGCCGACCAGACCCTGATGTTGGATGTGCACCTGACACGGCATCT
TCATCCCCATGTATTCAGCCTGACCGGTGCAAATGAACAGGGGGACTTCAGACAGCTGGCAGAGGTTTAA

Upstream 100 bases:

>100_bases
GGCCCTTGGGGATTGGATACTGCCTTGAGCTTGTCAGTGCCTGCGGTTTGTGTTCTTTTATGGCATTCAATTGATTGGCT
TTTTCAGGGAGGATGCCAGA

Downstream 100 bases:

>100_bases
CCTGATGTAAGCGCTTTAACGATATCTTTGTCGGCGACCGCTTGTGTTTGCCATGGATTGTGCGTATAACAGGCCTTTGT
GATACAAAAGTGTTACAAAT

Product: phospholipase

Products: NA

Alternate protein names: PlaB Phospholipase

Number of amino acids: Translated: 449; Mature: 449

Protein sequence:

>449_residues
MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAFERARQERLQDERFAVVTHST
GAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPANHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQG
QHQLSRYWLSQNPVADGLYPFVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT
ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQKMADSRPRTGPRFTQLVVRL
WDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRSGNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVE
FRCAGHLADYLVADQTLMLDVHLTRHLHPHVFSLTGANEQGDFRQLAEV

Sequences:

>Translated_449_residues
MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAFERARQERLQDERFAVVTHST
GAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPANHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQG
QHQLSRYWLSQNPVADGLYPFVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT
ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQKMADSRPRTGPRFTQLVVRL
WDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRSGNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVE
FRCAGHLADYLVADQTLMLDVHLTRHLHPHVFSLTGANEQGDFRQLAEV
>Mature_449_residues
MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAFERARQERLQDERFAVVTHST
GAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPANHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQG
QHQLSRYWLSQNPVADGLYPFVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT
ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQKMADSRPRTGPRFTQLVVRL
WDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRSGNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVE
FRCAGHLADYLVADQTLMLDVHLTRHLHPHVFSLTGANEQGDFRQLAEV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49995; Mature: 49995

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAF
CEEEEEECCCCCCCHHHCCCHHHHHHHCCHHHEEEHHHHHCCCEECCCCCEEEEHHHHHH
ERARQERLQDERFAVVTHSTGAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPA
HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHEEEEECC
NHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQGQHQLSRYWLSQNPVADGLYP
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE
FVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT
EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEE
ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQ
HHHHCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
KMADSRPRTGPRFTQLVVRLWDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRS
HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
GNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVEFRCAGHLADYLVADQTLMLD
CCEEEEEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VHLTRHLHPHVFSLTGANEQGDFRQLAEV
EEHHHCCCCCEEEEECCCCCCHHHHHHCC
>Mature Secondary Structure
MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAF
CEEEEEECCCCCCCHHHCCCHHHHHHHCCHHHEEEHHHHHCCCEECCCCCEEEEHHHHHH
ERARQERLQDERFAVVTHSTGAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPA
HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHEEEEECC
NHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQGQHQLSRYWLSQNPVADGLYP
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE
FVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT
EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEE
ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQ
HHHHCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
KMADSRPRTGPRFTQLVVRLWDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRS
HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC
GNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVEFRCAGHLADYLVADQTLMLD
CCEEEEEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
VHLTRHLHPHVFSLTGANEQGDFRQLAEV
EEHHHCCCCCEEEEECCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA