| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776446
Identifier: 119776446
GI number: 119776446
Start: 3944545
End: 3945894
Strand: Reverse
Name: 119776446
Synonym: Sama_3314
Alternate gene names: NA
Gene position: 3945894-3944545 (Counterclockwise)
Preceding gene: 119776447
Following gene: 119776445
Centisome position: 91.63
GC content: 59.48
Gene sequence:
>1350_bases GTGAAACTGGTGATGGTGCATGGCTGGAGCGTCACAGATACCCGGGTGTATGGGGGCTTGCCTGAGGCGCTGGCTCGCTT TGCCCCTGAATCGCTGGCGCTGGATATCGAGCACATCTTTCTGGGCCGCTATATCAGCTTCAATGACGAGGTGCGCATTA CGGATGTGGCGGATGCGTTCGAGCGCGCGAGGCAGGAGCGTTTGCAGGATGAACGCTTTGCCGTAGTGACCCATTCCACC GGCGCGCCGGTTATCCGCACCTGGCTTGCCCGCTACTATGCTGCATTGCCTCAGGGCGAGCAGGGGCAAAAGGCACTGAA CCAATGTCCGCTGAGCCACCTGATTATGCTTGCCCCCGCCAACCATGGCTCGGCACTGGCGCAGCTGGGTAAATCCCGCC TTGGGCGGCTCAAATCCTGGTTTGATGGGGTAGAGCCGGGGCAGCAAATCCTCGACTGGCTGGAGCTGGGCAGCCAGGGG CAACATCAACTGAGCCGCTACTGGCTCAGCCAGAACCCCGTGGCCGATGGTCTGTATCCCTTTGTGATAAGTGGCGAAAC CATCGACAGTAACCTCTATGACTTCCTCAACAGTTACACTGCCGAGCCGGGCAGCGATGGTGTCGTTCGCCTCGCCGGCG CCAATCTCAACTATCGCAGCCTTGAACTTGCCGAAACCCCAACCCTGGACGATACCGGCCGGGCTGAGCTGTCCATCACG GCCGATGTCATGGCGCCCGCCTGTGGCTTTGAAGTGCTGCCAAGGGCCAGCCACAGCGGCAACAAGCTTGGGATCATGAC CTCGGTCAATGGTCGCTCGCCAAAGCCCAAACCTGTGGTCAGCCGTATCCTGCAATGTTTGCAGGTGGGGTCGGCCGGGG ATTACAGCGCCCTTTGCCAGAAAATGGCTGACAGCCGCCCCAGAACCGGCCCGCGCTTTACCCAACTGGTGGTGCGGCTG TGGGACAACGAAGGTGAGCCCATCCGCGACTTCGATTTTTTGCTGCTGGCAGGGCCTGACTACGACCCCGGTAAGCTGCC TAAAGGCTTTTTTCAGGACAGACAAAAAAATCAGCGCAGTGGCAATGCCCTGACCCTCTACCTGAACCATGACCGCATGC TGAAAACCGCCCAAGGCTGCTGGGGTTTTCGCATTATTCCCCGCCCGGACAGGGGGCTTGCTCACTATCGGCAAGTGGAG TTTCGCTGCGCCGGACACCTTGCCGACTACCTTGTGGCCGACCAGACCCTGATGTTGGATGTGCACCTGACACGGCATCT TCATCCCCATGTATTCAGCCTGACCGGTGCAAATGAACAGGGGGACTTCAGACAGCTGGCAGAGGTTTAA
Upstream 100 bases:
>100_bases GGCCCTTGGGGATTGGATACTGCCTTGAGCTTGTCAGTGCCTGCGGTTTGTGTTCTTTTATGGCATTCAATTGATTGGCT TTTTCAGGGAGGATGCCAGA
Downstream 100 bases:
>100_bases CCTGATGTAAGCGCTTTAACGATATCTTTGTCGGCGACCGCTTGTGTTTGCCATGGATTGTGCGTATAACAGGCCTTTGT GATACAAAAGTGTTACAAAT
Product: phospholipase
Products: NA
Alternate protein names: PlaB Phospholipase
Number of amino acids: Translated: 449; Mature: 449
Protein sequence:
>449_residues MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAFERARQERLQDERFAVVTHST GAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPANHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQG QHQLSRYWLSQNPVADGLYPFVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQKMADSRPRTGPRFTQLVVRL WDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRSGNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVE FRCAGHLADYLVADQTLMLDVHLTRHLHPHVFSLTGANEQGDFRQLAEV
Sequences:
>Translated_449_residues MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAFERARQERLQDERFAVVTHST GAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPANHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQG QHQLSRYWLSQNPVADGLYPFVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQKMADSRPRTGPRFTQLVVRL WDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRSGNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVE FRCAGHLADYLVADQTLMLDVHLTRHLHPHVFSLTGANEQGDFRQLAEV >Mature_449_residues MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAFERARQERLQDERFAVVTHST GAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPANHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQG QHQLSRYWLSQNPVADGLYPFVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQKMADSRPRTGPRFTQLVVRL WDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRSGNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVE FRCAGHLADYLVADQTLMLDVHLTRHLHPHVFSLTGANEQGDFRQLAEV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49995; Mature: 49995
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAF CEEEEEECCCCCCCHHHCCCHHHHHHHCCHHHEEEHHHHHCCCEECCCCCEEEEHHHHHH ERARQERLQDERFAVVTHSTGAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPA HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHEEEEECC NHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQGQHQLSRYWLSQNPVADGLYP CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE FVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEE ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQ HHHHCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH KMADSRPRTGPRFTQLVVRLWDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRS HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC GNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVEFRCAGHLADYLVADQTLMLD CCEEEEEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE VHLTRHLHPHVFSLTGANEQGDFRQLAEV EEHHHCCCCCEEEEECCCCCCHHHHHHCC >Mature Secondary Structure MKLVMVHGWSVTDTRVYGGLPEALARFAPESLALDIEHIFLGRYISFNDEVRITDVADAF CEEEEEECCCCCCCHHHCCCHHHHHHHCCHHHEEEHHHHHCCCEECCCCCEEEEHHHHHH ERARQERLQDERFAVVTHSTGAPVIRTWLARYYAALPQGEQGQKALNQCPLSHLIMLAPA HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHEEEEECC NHGSALAQLGKSRLGRLKSWFDGVEPGQQILDWLELGSQGQHQLSRYWLSQNPVADGLYP CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCE FVISGETIDSNLYDFLNSYTAEPGSDGVVRLAGANLNYRSLELAETPTLDDTGRAELSIT EEEECCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEE ADVMAPACGFEVLPRASHSGNKLGIMTSVNGRSPKPKPVVSRILQCLQVGSAGDYSALCQ HHHHCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH KMADSRPRTGPRFTQLVVRLWDNEGEPIRDFDFLLLAGPDYDPGKLPKGFFQDRQKNQRS HHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC GNALTLYLNHDRMLKTAQGCWGFRIIPRPDRGLAHYRQVEFRCAGHLADYLVADQTLMLD CCEEEEEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE VHLTRHLHPHVFSLTGANEQGDFRQLAEV EEHHHCCCCCEEEEECCCCCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA