Click here to switch to the map view.

The map label for this gene is 119776371

Identifier: 119776371

GI number: 119776371

Start: 3832379

End: 3833395

Strand: Reverse

Name: 119776371

Synonym: Sama_3239

Alternate gene names: NA

Gene position: 3833395-3832379 (Counterclockwise)

Preceding gene: 119776372

Following gene: 119776370

Centisome position: 89.02

GC content: 52.31

Gene sequence:

>1017_bases
ATGTACAAAGCACTTATTGCACTGGCACTGCTTGCTCCCGGCAGCGCTGTACTGGCCGCCGATGCGGATTTTTATGGCCG
TATCAACCTGTCGGTGACCGACTCTGACCTGGGCGTAGCCGCCCAAAATGGCAAGGCCGGTACCGTACTGGAAAACAACT
CCTCCCGTATTGGGGTAAAAGGCAGCGAAGCCATAGGCGAAGGGCTGGAGGTGTTTTACAAGCTGGAGTTTGGAGTGGAT
AACTTCGATAACTCAGGCAAAACCTTCAAACCCCGTAACACCTACATTGGGGTGAAAACCGATTTCGGTGCCGTGAGCTT
CGGTCGCAACGACAGCGTCTTCAAAACAGCTGAAGGCACTGTTGACGCCTTCAACGGTCTCAACTCAGATATAAACCAGT
TGTTGCCAGGGCAAGACCGTTTCGGGGACAGCGTGACCTTCAACTCCCCTAAACTCGGAAAGCTGGTCACCCTGAACGGT
ACGTACCTCGTCAGTGACAATTATGACAGCAGCAATGCAGCCTATGCCATTTCCGCCACCCTTGGCGACGCCAAACTGAA
GAAACAGGACTGGTATCTGGCGTTCGCCTACAACGATGGTCTGAAGAGCATTGAATCCAGTCGTGTTGTAGGGCAAATCA
AGCTGGGCGATTTGATGCTGGGCGGCCTGTACCAGCAGAGTGAGCACCAGAGCAAGTCCAACCTGGACGGCAACAGTTAT
TACGCCAACGTGACCTATAGCATTGGCAAGACCGACCTCAAGCTGGTCTACGGCCACGATGATGCGGGACTTGGAAAGTA
CGTATCAAACTTCATCAAGTCTCAAACCAGTGGCAGCACGTCTCAAGTGGCGGATGTCGATTTGAACCAGCTGAGTGTGG
GTGTTAACCATAAACTGGCCAAGAGCACTCAAATCTATGGTCATTACACCCGCTACGATGGTGATCTGTTGCTCGATGGT
GTGAATGTCTCCCTCGATGACGACCTTATCACCCTGGGGATTCGCTACGACTTTTAA

Upstream 100 bases:

>100_bases
CCATGAGTGTGTGGAATGCCAAGAAGGTAGTGGATTACTGATAACGGCCGGGCCACCTGCGGGTGGCCCGAAGCAAACCA
ATCGCGTAAGGAATTTCATT

Downstream 100 bases:

>100_bases
TCCCTGATTGTTTCCACTGTAACTTCTATCTCAAGCGGGCATTGGCTCGTGATTGCTCCTTCACCCTGGGCAATGGCCGT
CGGGCGCCTCTTCACCGACG

Product: outer membrane porin

Products: NA

Alternate protein names: Porin Gram-Negative Type; Outer Membrane Protein; Gram-Negative Porin Superfamily; Outer Membrane Porin Protein; Gram-Negative Type Outer Membrane Porin Protein; Porin Signal Peptide Protein

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MYKALIALALLAPGSAVLAADADFYGRINLSVTDSDLGVAAQNGKAGTVLENNSSRIGVKGSEAIGEGLEVFYKLEFGVD
NFDNSGKTFKPRNTYIGVKTDFGAVSFGRNDSVFKTAEGTVDAFNGLNSDINQLLPGQDRFGDSVTFNSPKLGKLVTLNG
TYLVSDNYDSSNAAYAISATLGDAKLKKQDWYLAFAYNDGLKSIESSRVVGQIKLGDLMLGGLYQQSEHQSKSNLDGNSY
YANVTYSIGKTDLKLVYGHDDAGLGKYVSNFIKSQTSGSTSQVADVDLNQLSVGVNHKLAKSTQIYGHYTRYDGDLLLDG
VNVSLDDDLITLGIRYDF

Sequences:

>Translated_338_residues
MYKALIALALLAPGSAVLAADADFYGRINLSVTDSDLGVAAQNGKAGTVLENNSSRIGVKGSEAIGEGLEVFYKLEFGVD
NFDNSGKTFKPRNTYIGVKTDFGAVSFGRNDSVFKTAEGTVDAFNGLNSDINQLLPGQDRFGDSVTFNSPKLGKLVTLNG
TYLVSDNYDSSNAAYAISATLGDAKLKKQDWYLAFAYNDGLKSIESSRVVGQIKLGDLMLGGLYQQSEHQSKSNLDGNSY
YANVTYSIGKTDLKLVYGHDDAGLGKYVSNFIKSQTSGSTSQVADVDLNQLSVGVNHKLAKSTQIYGHYTRYDGDLLLDG
VNVSLDDDLITLGIRYDF
>Mature_338_residues
MYKALIALALLAPGSAVLAADADFYGRINLSVTDSDLGVAAQNGKAGTVLENNSSRIGVKGSEAIGEGLEVFYKLEFGVD
NFDNSGKTFKPRNTYIGVKTDFGAVSFGRNDSVFKTAEGTVDAFNGLNSDINQLLPGQDRFGDSVTFNSPKLGKLVTLNG
TYLVSDNYDSSNAAYAISATLGDAKLKKQDWYLAFAYNDGLKSIESSRVVGQIKLGDLMLGGLYQQSEHQSKSNLDGNSY
YANVTYSIGKTDLKLVYGHDDAGLGKYVSNFIKSQTSGSTSQVADVDLNQLSVGVNHKLAKSTQIYGHYTRYDGDLLLDG
VNVSLDDDLITLGIRYDF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36325; Mature: 36325

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKALIALALLAPGSAVLAADADFYGRINLSVTDSDLGVAAQNGKAGTVLENNSSRIGVK
CHHHHEEHHHHCCCCEEEEECCCCEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEECC
GSEAIGEGLEVFYKLEFGVDNFDNSGKTFKPRNTYIGVKTDFGAVSFGRNDSVFKTAEGT
CHHHHCCCEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCEEEECCCCCEEEECCCC
VDAFNGLNSDINQLLPGQDRFGDSVTFNSPKLGKLVTLNGTYLVSDNYDSSNAAYAISAT
HHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCCEEEEECCEEEEECCCCCCCCEEEEEEE
LGDAKLKKQDWYLAFAYNDGLKSIESSRVVGQIKLGDLMLGGLYQQSEHQSKSNLDGNSY
CCCCEEECCCEEEEEEECCCCHHHCCCCEEEEEEECCEEECCHHHHHHHHHHCCCCCCEE
YANVTYSIGKTDLKLVYGHDDAGLGKYVSNFIKSQTSGSTSQVADVDLNQLSVGVNHKLA
EEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHEEECCCCCCC
KSTQIYGHYTRYDGDLLLDGVNVSLDDDLITLGIRYDF
CCEEEEEEEEEECCCEEEECCEEEECCCEEEEEEEECC
>Mature Secondary Structure
MYKALIALALLAPGSAVLAADADFYGRINLSVTDSDLGVAAQNGKAGTVLENNSSRIGVK
CHHHHEEHHHHCCCCEEEEECCCCEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEECC
GSEAIGEGLEVFYKLEFGVDNFDNSGKTFKPRNTYIGVKTDFGAVSFGRNDSVFKTAEGT
CHHHHCCCEEEEEEEEECCCCCCCCCCEECCCCCEEEEEECCCEEEECCCCCEEEECCCC
VDAFNGLNSDINQLLPGQDRFGDSVTFNSPKLGKLVTLNGTYLVSDNYDSSNAAYAISAT
HHHHCCCCCCHHHHCCCCCCCCCCEEECCCCCCEEEEECCEEEEECCCCCCCCEEEEEEE
LGDAKLKKQDWYLAFAYNDGLKSIESSRVVGQIKLGDLMLGGLYQQSEHQSKSNLDGNSY
CCCCEEECCCEEEEEEECCCCHHHCCCCEEEEEEECCEEECCHHHHHHHHHHCCCCCCEE
YANVTYSIGKTDLKLVYGHDDAGLGKYVSNFIKSQTSGSTSQVADVDLNQLSVGVNHKLA
EEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCHHHEEECCCCCCC
KSTQIYGHYTRYDGDLLLDGVNVSLDDDLITLGIRYDF
CCEEEEEEEEEECCCEEEECCEEEECCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA