Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776311

Identifier: 119776311

GI number: 119776311

Start: 3768411

End: 3770216

Strand: Direct

Name: 119776311

Synonym: Sama_3179

Alternate gene names: NA

Gene position: 3768411-3770216 (Clockwise)

Preceding gene: 119776310

Following gene: 119776312

Centisome position: 87.51

GC content: 56.64

Gene sequence:

>1806_bases
ATGGGGCAAACCCCAGGGCCTGTTACAACCCAAATTCGACCGGCGCGACCGGTCAGGAGCGTGAGTATGCGTACCCTTAT
CTCTCTGGCAGTGGCAAGTGCACTGGGATTTACTCCCTTACTGTTCACCTCTCAGTCGTTGGCCGCTGACAACACCGCAA
ATAGCGACCAGGCCAAAATCGAGCGGCTGCAACAAAAAATCGATGAACTGTCCGAAGAACTGGCAGACCTCGATACCCGA
GTCAATAAAACCGAACGCCACACAGCACTGGACAGAATCACCTTCAGTGGCGACTTTCGCACCAAGGTGCATTCGCTGCA
CTACCGTGATGTCACCTGGAACCCCGGCATCAAGATGAACTTTGATGACTTCGGCCGCCGTGCCATGGCCGGTGAATACG
GCGATCCCATGGATCCGACCTCCCCCCTTGGCAAGATGATGGCCGCCAACCCGGATATGGCCGCCGCCTTTATGGGTGGG
CAACTCTCCGGTGTGATGCCCTGGGCCCTTGGCAGCACAAACACCTACGATATCGACAACGACCTCTTTTACACCACCCG
TCTGCGCCTCGATATCAAAGCCAATGTATGGGAAAACGTGAACTTTGCCGGGCGTTTGTCCATGTACAAAAACTGGGGCG
ACTCTACCGGTGTGCAGGTATTCGATTCCTGGCGTTCTTTCTCCATGGACGGTACCAATTCCGGCAACACCAGCGGTGAC
TGGCTGCGGGTAGAACGTGCTTATTTCGACTGGAAAAACATCGGTGGCAGCGAGTTCTATCTGTCTATCGGCCGTCGTCC
ATCCACCTATGGCCCTCCTTCAAATATCCGCGAAAATGAACAGCGCGGCGGCACGCCTTCCGGCCATCTGGTGCACTTTA
ACTTCGATGGCGCCACCCTGGGTTATAACCTGGGTGAAATCACCGGCATCGAAGGCCAGGTCGTACGCTTCTGTTATGGC
CAGGGTTTTGAGTCCCAGTGGGGTAATGGCGAACTGTTTGGCAACCTTGTAACCGAAGACACCCACCTCGGCGGCTTCAA
CATCGACGTCATCAACGATGGTAACCACTTCGTGCAGTTGACCCTGTTCGGCGCCAAGGACATCAACGATGGCTTCAAGG
GCTCCATGGCCTTCCCCAACGAACTGGCGGCCATTTTCGCCCCCACCATGTATCAGGACATGCAAAAGTTCGACAGCTTC
AACTTTGTCACCCGGGTACAACCCAGCGGTGTGATTGGTGACATGTTCCTGGGTGGCTTGGGCTACGTGTATGAATCTGA
TGAAGATTTTAAAGCCTTTGCGTCACTGGGCTGGACCCGCGCCGAGTCAAACGGCAATGCAGGCATGTTTGGCGGCCTGC
TCACCGACGCGACCTTTACGGGCAAACTCAGTGCCGATGGCAGCGAGCTGATGATGGTGCCGCTGGCCGCCGAGAGTGAT
GCCGCCCACGACGGCTACGGCGTCTATATCGGCATGCAAATGCCCGCCCCCTACGGCAAGTTTGGTCTCGAGTATAACTA
CGGCTCCAAATACTGGAGTCCCTTCACCCAGGCCCAGGACGACCCCATCGGCAGCAAGCTCGCCACCCGTGGCCATGTGG
TCGAGGCCTACTACCTGTTCGAGGTCAATCCCCGGATGTTTATCAAGCTCGCTGGCCTTTACTACGACTATGAGTACACC
GGCTCTGGCACCCCGGTTGGTGCACCAGTGAAGGTGGATGACGTAATGGCAGGCAGCGCCGTGTCCCTGCTGCCCGTGGT
GGATACCGCCGTGGACCTCAACGCCTCACTCACAGTGAAGTTCTAA

Upstream 100 bases:

>100_bases
ACTCGGACCAACCGCAGACCTGCGGCTAACCCCAAGCGGATAAGCCTCGCCCGACAATAACGGGCAAACACCAGAAAAAA
CTTCCCGGGTTGCGGGATGC

Downstream 100 bases:

>100_bases
CCTCTCAAAGCCCCGGCACTGCCGGGGCAGGAGTTTGACCATGAGAACAGTTTTCTCCCAATGGGCCCTTGCCCCCCTGT
CCGGCGTGATGCTGCTGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 601; Mature: 600

Protein sequence:

>601_residues
MGQTPGPVTTQIRPARPVRSVSMRTLISLAVASALGFTPLLFTSQSLAADNTANSDQAKIERLQQKIDELSEELADLDTR
VNKTERHTALDRITFSGDFRTKVHSLHYRDVTWNPGIKMNFDDFGRRAMAGEYGDPMDPTSPLGKMMAANPDMAAAFMGG
QLSGVMPWALGSTNTYDIDNDLFYTTRLRLDIKANVWENVNFAGRLSMYKNWGDSTGVQVFDSWRSFSMDGTNSGNTSGD
WLRVERAYFDWKNIGGSEFYLSIGRRPSTYGPPSNIRENEQRGGTPSGHLVHFNFDGATLGYNLGEITGIEGQVVRFCYG
QGFESQWGNGELFGNLVTEDTHLGGFNIDVINDGNHFVQLTLFGAKDINDGFKGSMAFPNELAAIFAPTMYQDMQKFDSF
NFVTRVQPSGVIGDMFLGGLGYVYESDEDFKAFASLGWTRAESNGNAGMFGGLLTDATFTGKLSADGSELMMVPLAAESD
AAHDGYGVYIGMQMPAPYGKFGLEYNYGSKYWSPFTQAQDDPIGSKLATRGHVVEAYYLFEVNPRMFIKLAGLYYDYEYT
GSGTPVGAPVKVDDVMAGSAVSLLPVVDTAVDLNASLTVKF

Sequences:

>Translated_601_residues
MGQTPGPVTTQIRPARPVRSVSMRTLISLAVASALGFTPLLFTSQSLAADNTANSDQAKIERLQQKIDELSEELADLDTR
VNKTERHTALDRITFSGDFRTKVHSLHYRDVTWNPGIKMNFDDFGRRAMAGEYGDPMDPTSPLGKMMAANPDMAAAFMGG
QLSGVMPWALGSTNTYDIDNDLFYTTRLRLDIKANVWENVNFAGRLSMYKNWGDSTGVQVFDSWRSFSMDGTNSGNTSGD
WLRVERAYFDWKNIGGSEFYLSIGRRPSTYGPPSNIRENEQRGGTPSGHLVHFNFDGATLGYNLGEITGIEGQVVRFCYG
QGFESQWGNGELFGNLVTEDTHLGGFNIDVINDGNHFVQLTLFGAKDINDGFKGSMAFPNELAAIFAPTMYQDMQKFDSF
NFVTRVQPSGVIGDMFLGGLGYVYESDEDFKAFASLGWTRAESNGNAGMFGGLLTDATFTGKLSADGSELMMVPLAAESD
AAHDGYGVYIGMQMPAPYGKFGLEYNYGSKYWSPFTQAQDDPIGSKLATRGHVVEAYYLFEVNPRMFIKLAGLYYDYEYT
GSGTPVGAPVKVDDVMAGSAVSLLPVVDTAVDLNASLTVKF
>Mature_600_residues
GQTPGPVTTQIRPARPVRSVSMRTLISLAVASALGFTPLLFTSQSLAADNTANSDQAKIERLQQKIDELSEELADLDTRV
NKTERHTALDRITFSGDFRTKVHSLHYRDVTWNPGIKMNFDDFGRRAMAGEYGDPMDPTSPLGKMMAANPDMAAAFMGGQ
LSGVMPWALGSTNTYDIDNDLFYTTRLRLDIKANVWENVNFAGRLSMYKNWGDSTGVQVFDSWRSFSMDGTNSGNTSGDW
LRVERAYFDWKNIGGSEFYLSIGRRPSTYGPPSNIRENEQRGGTPSGHLVHFNFDGATLGYNLGEITGIEGQVVRFCYGQ
GFESQWGNGELFGNLVTEDTHLGGFNIDVINDGNHFVQLTLFGAKDINDGFKGSMAFPNELAAIFAPTMYQDMQKFDSFN
FVTRVQPSGVIGDMFLGGLGYVYESDEDFKAFASLGWTRAESNGNAGMFGGLLTDATFTGKLSADGSELMMVPLAAESDA
AHDGYGVYIGMQMPAPYGKFGLEYNYGSKYWSPFTQAQDDPIGSKLATRGHVVEAYYLFEVNPRMFIKLAGLYYDYEYTG
SGTPVGAPVKVDDVMAGSAVSLLPVVDTAVDLNASLTVKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65897; Mature: 65766

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQTPGPVTTQIRPARPVRSVSMRTLISLAVASALGFTPLLFTSQSLAADNTANSDQAKI
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCCCHHHHH
ERLQQKIDELSEELADLDTRVNKTERHTALDRITFSGDFRTKVHSLHYRDVTWNPGIKMN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCEEEEEEEEEEEEECCCCEEC
FDDFGRRAMAGEYGDPMDPTSPLGKMMAANPDMAAAFMGGQLSGVMPWALGSTNTYDIDN
HHHHCCHHHCCCCCCCCCCCCHHHHHHHCCCCCEEHCCCCCCCCCCCEECCCCCEEECCC
DLFYTTRLRLDIKANVWENVNFAGRLSMYKNWGDSTGVQVFDSWRSFSMDGTNSGNTSGD
CEEEEEEEEEEEEECCCCCCCCEEEEEHHHCCCCCCCCCEEECHHHCCCCCCCCCCCCCC
WLRVERAYFDWKNIGGSEFYLSIGRRPSTYGPPSNIRENEQRGGTPSGHLVHFNFDGATL
EEEEEEEEEHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEE
GYNLGEITGIEGQVVRFCYGQGFESQWGNGELFGNLVTEDTHLGGFNIDVINDGNHFVQL
CCCCCCEECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCEECCCEEEEEEECCCEEEEE
TLFGAKDINDGFKGSMAFPNELAAIFAPTMYQDMQKFDSFNFVTRVQPSGVIGDMFLGGL
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCC
GYVYESDEDFKAFASLGWTRAESNGNAGMFGGLLTDATFTGKLSADGSELMMVPLAAESD
CEEEECCCHHHHHHHCCCEEECCCCCCCEECHHHCCCEEEEEECCCCCEEEEEEEECCCC
AAHDGYGVYIGMQMPAPYGKFGLEYNYGSKYWSPFTQAQDDPIGSKLATRGHVVEAYYLF
CCCCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEE
EVNPRMFIKLAGLYYDYEYTGSGTPVGAPVKVDDVMAGSAVSLLPVVDTAVDLNASLTVK
EECCEEEEEEEEEEEEEEECCCCCCCCCCEEHHHCCCCCCEEEEEHHHHHCCCCCEEEEE
F
C
>Mature Secondary Structure 
GQTPGPVTTQIRPARPVRSVSMRTLISLAVASALGFTPLLFTSQSLAADNTANSDQAKI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCCCHHHHH
ERLQQKIDELSEELADLDTRVNKTERHTALDRITFSGDFRTKVHSLHYRDVTWNPGIKMN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCEEEEEEEEEEEEECCCCEEC
FDDFGRRAMAGEYGDPMDPTSPLGKMMAANPDMAAAFMGGQLSGVMPWALGSTNTYDIDN
HHHHCCHHHCCCCCCCCCCCCHHHHHHHCCCCCEEHCCCCCCCCCCCEECCCCCEEECCC
DLFYTTRLRLDIKANVWENVNFAGRLSMYKNWGDSTGVQVFDSWRSFSMDGTNSGNTSGD
CEEEEEEEEEEEEECCCCCCCCEEEEEHHHCCCCCCCCCEEECHHHCCCCCCCCCCCCCC
WLRVERAYFDWKNIGGSEFYLSIGRRPSTYGPPSNIRENEQRGGTPSGHLVHFNFDGATL
EEEEEEEEEHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEE
GYNLGEITGIEGQVVRFCYGQGFESQWGNGELFGNLVTEDTHLGGFNIDVINDGNHFVQL
CCCCCCEECCCCCEEEEEECCCCCCCCCCCEEEEEEEECCEECCCEEEEEEECCCEEEEE
TLFGAKDINDGFKGSMAFPNELAAIFAPTMYQDMQKFDSFNFVTRVQPSGVIGDMFLGGL
EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCC
GYVYESDEDFKAFASLGWTRAESNGNAGMFGGLLTDATFTGKLSADGSELMMVPLAAESD
CEEEECCCHHHHHHHCCCEEECCCCCCCEECHHHCCCEEEEEECCCCCEEEEEEEECCCC
AAHDGYGVYIGMQMPAPYGKFGLEYNYGSKYWSPFTQAQDDPIGSKLATRGHVVEAYYLF
CCCCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEEEEE
EVNPRMFIKLAGLYYDYEYTGSGTPVGAPVKVDDVMAGSAVSLLPVVDTAVDLNASLTVK
EECCEEEEEEEEEEEEEEECCCCCCCCCCEEHHHCCCCCCEEEEEHHHHHCCCCCEEEEE
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA