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The map label for this gene is yciR [C]

Identifier: 119776293

GI number: 119776293

Start: 3747090

End: 3748820

Strand: Reverse

Name: yciR [C]

Synonym: Sama_3161

Alternate gene names: 119776293

Gene position: 3748820-3747090 (Counterclockwise)

Preceding gene: 119776294

Following gene: 119776292

Centisome position: 87.06

GC content: 50.55

Gene sequence:

>1731_bases
ATGAATTTATTACTGGTTGATGATGATGCAGTCGATCGTGAGATGATAGTTCGCGCGCTGTCCCAGTCAGACCGTGGTTT
TACCGTGTCTGAGTCCTGCTATGCCAAAGATGCGATGATCAAAATTAAGCAGCAGCACTTTGACGGCATCTTGTTGGACT
ATATGCTGCCCGATGCCAATGGTCTCGAAGTCCTGACCTGGCTCAATGACATCAGCAACGAGAGTATTGCGGTGGTGATG
ATAAGCCGCTACGAGGATGAAAAACTGGCTGAGCGTTGCATAGAATTGGGCGCGCAGGACTTTTTGCTTAAGGATGAAGT
CTCCTCGAGTCGTTTGTGCCGTGCCATTATCAATGCAAAGCAGCGTTTTTCTATGGCCAGGGCCCTGCGCCGAAGTCATG
AAAAGTTACGTGAGCTTGCCGAACACGACTCCCTCACCCGGCTGGTGAATCGCTATGGCTTTGAATTGTGTCTGAATCGT
GCCCTCAGTCAGGTACGGCGTACCGGAGGTATGCTCAGTGTTATCTTGCTTGATCTCGATGATTTTAAAGGCGTAAACGA
TACCCTTGGCCACCAGATGGGTGATGTGCTGCTGGTGGAGGTGGCGACACGTCTGTCTTCGGCGCTGCGTGAAAATGACC
TGATAGCACGCATTGGTGGCGATGAATTTGTGGCCCTAATTTGCGATCAGGATACCCGCTTTTTACCATTTGACCTCGCC
AAGCGTTTACTCAGTACCTTTGAGGAGCCTTTCCAGCTTGGAGACAGCGCTGTGATGATGGGAGCCAGTCTCGGCATCGC
CATATACGGTGAGTGCGCCAATACAGCTTATGACCTGCTGAAATGTGCCGACATTGCCATGTATCGCGCCAAGGAAGAGG
GACGAAATCAAATCCAGTTTTATTCCCTTGATCTGGAAAATGAAGTTAAACGTCGCACCCGCATTGAGCAAGGGCTGCGA
CTTGCATTGAGTAACAATGAACTTGTGCTCTATTACCAGGGTAAATTTGATGCTCTGTCTGGCTATCTCAGTGGTGTGGA
GGTGCTGCTGCGCTGGCAACATCCTACCGATGGCCTGCTGGCCCCCGATACCTTTCTGAGCATTGCCGAGGATGTTGGTT
TGACCGAGCAAATTGGCAAATGGGTGCTCAACACAGCCTGTCAGCAGGTGAGCCTGTGGCTGAAACAGATTGGCCAATAT
TTGCCTGGTTTTTCAGTGGCGGTCAACTTCTCGGCGTCGCAAATTTCGGCGGTAAATCTGGTCTCTGTTATCGAACATGC
TCTGGCAGAAAGTGGCCTGCCGGCGCACAATCTGGAGTTGGAAATCACCGAAAACGCCTTGATTAAAAACCCAGAGGAAA
TCGCTTCTGTGCTCGATAGAATTGAGAGCATGGGGGTGACTATGGCACTGGATGACTTTGGCACAGGCTATTCGTCTCTC
GAGCACCTGATGCATTTCCCTATCCAGGTTATCAAGATAGATAAAAGCCTGGTGGCAACAGTGCCCCAGGATGAAAAAGG
TTGCCGCCTGTTAACGGCGCTGCTGAATTTCGCCCAGGGCTTTGGCATGGTGTCGGTTGCCGAGGGGATTGAAACCCAGG
CTCAGGCAGATTTTTGTACTGATCATGGTTGCAACCTGCTGCAGGGATACTTGCTGGGCAAGCCTGTGGATGCCAAGACA
TTTGAAACACAATTCCTGCTGCCAACACTTACCAAATTCCAACAGAGATAA

Upstream 100 bases:

>100_bases
GTGGTCAAAAGTAATATAAAAGACGAATTTGAAAGAATTATCAATATGTTGGATGGGTACTGGCGCATAGTGGAATTACC
CAAATTATGAAGGTTAAACC

Downstream 100 bases:

>100_bases
CTTGCCAAGCCTTGGTGATTACTACAAAATTTTCTCACTTAACTTTCTTTGGCGCCTGAGTCGCCACGGTATACTGCGAT
GAAAATCGGTGTGTTGTCCC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 576

Protein sequence:

>576_residues
MNLLLVDDDAVDREMIVRALSQSDRGFTVSESCYAKDAMIKIKQQHFDGILLDYMLPDANGLEVLTWLNDISNESIAVVM
ISRYEDEKLAERCIELGAQDFLLKDEVSSSRLCRAIINAKQRFSMARALRRSHEKLRELAEHDSLTRLVNRYGFELCLNR
ALSQVRRTGGMLSVILLDLDDFKGVNDTLGHQMGDVLLVEVATRLSSALRENDLIARIGGDEFVALICDQDTRFLPFDLA
KRLLSTFEEPFQLGDSAVMMGASLGIAIYGECANTAYDLLKCADIAMYRAKEEGRNQIQFYSLDLENEVKRRTRIEQGLR
LALSNNELVLYYQGKFDALSGYLSGVEVLLRWQHPTDGLLAPDTFLSIAEDVGLTEQIGKWVLNTACQQVSLWLKQIGQY
LPGFSVAVNFSASQISAVNLVSVIEHALAESGLPAHNLELEITENALIKNPEEIASVLDRIESMGVTMALDDFGTGYSSL
EHLMHFPIQVIKIDKSLVATVPQDEKGCRLLTALLNFAQGFGMVSVAEGIETQAQADFCTDHGCNLLQGYLLGKPVDAKT
FETQFLLPTLTKFQQR

Sequences:

>Translated_576_residues
MNLLLVDDDAVDREMIVRALSQSDRGFTVSESCYAKDAMIKIKQQHFDGILLDYMLPDANGLEVLTWLNDISNESIAVVM
ISRYEDEKLAERCIELGAQDFLLKDEVSSSRLCRAIINAKQRFSMARALRRSHEKLRELAEHDSLTRLVNRYGFELCLNR
ALSQVRRTGGMLSVILLDLDDFKGVNDTLGHQMGDVLLVEVATRLSSALRENDLIARIGGDEFVALICDQDTRFLPFDLA
KRLLSTFEEPFQLGDSAVMMGASLGIAIYGECANTAYDLLKCADIAMYRAKEEGRNQIQFYSLDLENEVKRRTRIEQGLR
LALSNNELVLYYQGKFDALSGYLSGVEVLLRWQHPTDGLLAPDTFLSIAEDVGLTEQIGKWVLNTACQQVSLWLKQIGQY
LPGFSVAVNFSASQISAVNLVSVIEHALAESGLPAHNLELEITENALIKNPEEIASVLDRIESMGVTMALDDFGTGYSSL
EHLMHFPIQVIKIDKSLVATVPQDEKGCRLLTALLNFAQGFGMVSVAEGIETQAQADFCTDHGCNLLQGYLLGKPVDAKT
FETQFLLPTLTKFQQR
>Mature_576_residues
MNLLLVDDDAVDREMIVRALSQSDRGFTVSESCYAKDAMIKIKQQHFDGILLDYMLPDANGLEVLTWLNDISNESIAVVM
ISRYEDEKLAERCIELGAQDFLLKDEVSSSRLCRAIINAKQRFSMARALRRSHEKLRELAEHDSLTRLVNRYGFELCLNR
ALSQVRRTGGMLSVILLDLDDFKGVNDTLGHQMGDVLLVEVATRLSSALRENDLIARIGGDEFVALICDQDTRFLPFDLA
KRLLSTFEEPFQLGDSAVMMGASLGIAIYGECANTAYDLLKCADIAMYRAKEEGRNQIQFYSLDLENEVKRRTRIEQGLR
LALSNNELVLYYQGKFDALSGYLSGVEVLLRWQHPTDGLLAPDTFLSIAEDVGLTEQIGKWVLNTACQQVSLWLKQIGQY
LPGFSVAVNFSASQISAVNLVSVIEHALAESGLPAHNLELEITENALIKNPEEIASVLDRIESMGVTMALDDFGTGYSSL
EHLMHFPIQVIKIDKSLVATVPQDEKGCRLLTALLNFAQGFGMVSVAEGIETQAQADFCTDHGCNLLQGYLLGKPVDAKT
FETQFLLPTLTKFQQR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=36.2385321100917, Blast_Score=269, Evalue=3e-73,
Organism=Escherichia coli, GI87081921, Length=472, Percent_Identity=31.5677966101695, Blast_Score=228, Evalue=8e-61,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=29.6380090497738, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1786507, Length=252, Percent_Identity=34.5238095238095, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=36.7768595041322, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=30.7392996108949, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=27.710843373494, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=32.9365079365079, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1788381, Length=443, Percent_Identity=27.313769751693, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87081743, Length=253, Percent_Identity=26.4822134387352, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1788849, Length=256, Percent_Identity=27.34375, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=27.6, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=31.2849162011173, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=263, Percent_Identity=30.4182509505703, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=29.0502793296089, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081977, Length=174, Percent_Identity=32.183908045977, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=36.5853658536585, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=33.5294117647059, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87082096, Length=260, Percent_Identity=26.1538461538462, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=35.8823529411765, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=208, Percent_Identity=27.8846153846154, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=177, Percent_Identity=28.8135593220339, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64201; Mature: 64201

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLVDDDAVDREMIVRALSQSDRGFTVSESCYAKDAMIKIKQQHFDGILLDYMLPDAN
CEEEEECCCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
GLEVLTWLNDISNESIAVVMISRYEDEKLAERCIELGAQDFLLKDEVSSSRLCRAIINAK
CCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCHHCEEHHCCCHHHHHHHHHHHH
QRFSMARALRRSHEKLRELAEHDSLTRLVNRYGFELCLNRALSQVRRTGGMLSVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECH
DFKGVNDTLGHQMGDVLLVEVATRLSSALRENDLIARIGGDEFVALICDQDTRFLPFDLA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHH
KRLLSTFEEPFQLGDSAVMMGASLGIAIYGECANTAYDLLKCADIAMYRAKEEGRNQIQF
HHHHHHHHHHHHCCCHHEEHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YSLDLENEVKRRTRIEQGLRLALSNNELVLYYQGKFDALSGYLSGVEVLLRWQHPTDGLL
EEECHHHHHHHHHHHHHCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHEECCCCCCCC
APDTFLSIAEDVGLTEQIGKWVLNTACQQVSLWLKQIGQYLPGFSVAVNFSASQISAVNL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
VSVIEHALAESGLPAHNLELEITENALIKNPEEIASVLDRIESMGVTMALDDFGTGYSSL
HHHHHHHHHHCCCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
EHLMHFPIQVIKIDKSLVATVPQDEKGCRLLTALLNFAQGFGMVSVAEGIETQAQADFCT
HHHHHCCEEEEEECHHHHEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHH
DHGCNLLQGYLLGKPVDAKTFETQFLLPTLTKFQQR
HCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLLVDDDAVDREMIVRALSQSDRGFTVSESCYAKDAMIKIKQQHFDGILLDYMLPDAN
CEEEEECCCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
GLEVLTWLNDISNESIAVVMISRYEDEKLAERCIELGAQDFLLKDEVSSSRLCRAIINAK
CCHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCHHCEEHHCCCHHHHHHHHHHHH
QRFSMARALRRSHEKLRELAEHDSLTRLVNRYGFELCLNRALSQVRRTGGMLSVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECH
DFKGVNDTLGHQMGDVLLVEVATRLSSALRENDLIARIGGDEFVALICDQDTRFLPFDLA
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHH
KRLLSTFEEPFQLGDSAVMMGASLGIAIYGECANTAYDLLKCADIAMYRAKEEGRNQIQF
HHHHHHHHHHHHCCCHHEEHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
YSLDLENEVKRRTRIEQGLRLALSNNELVLYYQGKFDALSGYLSGVEVLLRWQHPTDGLL
EEECHHHHHHHHHHHHHCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHEECCCCCCCC
APDTFLSIAEDVGLTEQIGKWVLNTACQQVSLWLKQIGQYLPGFSVAVNFSASQISAVNL
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
VSVIEHALAESGLPAHNLELEITENALIKNPEEIASVLDRIESMGVTMALDDFGTGYSSL
HHHHHHHHHHCCCCCCCEEEEEECCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
EHLMHFPIQVIKIDKSLVATVPQDEKGCRLLTALLNFAQGFGMVSVAEGIETQAQADFCT
HHHHHCCEEEEEECHHHHEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHH
DHGCNLLQGYLLGKPVDAKTFETQFLLPTLTKFQQR
HCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]