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The map label for this gene is rraB

Identifier: 119776270

GI number: 119776270

Start: 3726423

End: 3726848

Strand: Reverse

Name: rraB

Synonym: Sama_3138

Alternate gene names: 119776270

Gene position: 3726848-3726423 (Counterclockwise)

Preceding gene: 119776271

Following gene: 119776267

Centisome position: 86.55

GC content: 52.11

Gene sequence:

>426_bases
ATGTCTATTGAGCGCCTGCTTAAGGCCCAACAGGAAGAGACCCGTGATATCGTTCAGTCGCTGCTGGATGATGGTTCCGA
CCCGGATGCCGAGTACATGATTGAACATCATTTTTCGAGCACCAATTTCGATCGCCTTGAAAAAGCTGCGGTAGACGCCT
TCAAACTGGGCTTCGAAGTGACTGACGCCGAAGAGTTGGAACTGGATGACGGCAGTGTGATCCTCTGCTTTGACGCCATT
GCCAACCATGCTCTGGACGTGGACCTGATAGACAAGGCCTGTGAACAGCTGATCAACCTTGCTGCCAAGCAAAAGGTGGA
TTACGACGGCTGGGGCACCTATTTTATGGGTGACGATGAAGACTTCGACGACGAAGATGACGACGAAGACTACGACAAGG
ATGGCTTCCCCATCGAGCGTCACTGA

Upstream 100 bases:

>100_bases
CGTCTGGCCAACTGACGCCTTTTTTAATCTCTGTTATACTGCGCCCTGATTGCGCCTCCCGTGGTGGGCAGGCGCTTGCT
TTGTTTATTGGAGTCAGCCC

Downstream 100 bases:

>100_bases
TAACAAAAAAGCCCGTCTCACGACGGGCTTTTTTGTGCCTGTAAACCGGCTTATTCGCTGTAGATCACTGTGCGGTTGCG
TCCCTGCTGTTTAGCCTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSIERLLKAQQEETRDIVQSLLDDGSDPDAEYMIEHHFSSTNFDRLEKAAVDAFKLGFEVTDAEELELDDGSVILCFDAI
ANHALDVDLIDKACEQLINLAAKQKVDYDGWGTYFMGDDEDFDDEDDDEDYDKDGFPIERH

Sequences:

>Translated_141_residues
MSIERLLKAQQEETRDIVQSLLDDGSDPDAEYMIEHHFSSTNFDRLEKAAVDAFKLGFEVTDAEELELDDGSVILCFDAI
ANHALDVDLIDKACEQLINLAAKQKVDYDGWGTYFMGDDEDFDDEDDDEDYDKDGFPIERH
>Mature_140_residues
SIERLLKAQQEETRDIVQSLLDDGSDPDAEYMIEHHFSSTNFDRLEKAAVDAFKLGFEVTDAEELELDDGSVILCFDAIA
NHALDVDLIDKACEQLINLAAKQKVDYDGWGTYFMGDDEDFDDEDDDEDYDKDGFPIERH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family

Homologues:

Organism=Escherichia coli, GI1790704, Length=115, Percent_Identity=58.2608695652174, Blast_Score=138, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAB_SHEAM (A1SAD4)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_929010.1
- ProteinModelPortal:   A1SAD4
- SMR:   A1SAD4
- STRING:   A1SAD4
- GeneID:   4605385
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_3138
- NMPDR:   fig|326297.7.peg.2950
- eggNOG:   COG3076
- HOGENOM:   HBG297993
- OMA:   YTIEHHF
- PhylomeDB:   A1SAD4
- ProtClustDB:   PRK11191
- HAMAP:   MF_01888
- InterPro:   IPR009671
- InterPro:   IPR016716
- Gene3D:   G3DSA:3.30.70.970
- PIRSF:   PIRSF018193

Pfam domain/function: PF06877 DUF1260; SSF89946 DUF1260

EC number: NA

Molecular weight: Translated: 16076; Mature: 15945

Theoretical pI: Translated: 3.73; Mature: 3.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIERLLKAQQEETRDIVQSLLDDGSDPDAEYMIEHHFSSTNFDRLEKAAVDAFKLGFEV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
TDAEELELDDGSVILCFDAIANHALDVDLIDKACEQLINLAAKQKVDYDGWGTYFMGDDE
CCCCCEECCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
DFDDEDDDEDYDKDGFPIERH
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIERLLKAQQEETRDIVQSLLDDGSDPDAEYMIEHHFSSTNFDRLEKAAVDAFKLGFEV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
TDAEELELDDGSVILCFDAIANHALDVDLIDKACEQLINLAAKQKVDYDGWGTYFMGDDE
CCCCCEECCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
DFDDEDDDEDYDKDGFPIERH
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA