| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is caiD [C]
Identifier: 119776267
GI number: 119776267
Start: 3723299
End: 3724105
Strand: Reverse
Name: caiD [C]
Synonym: Sama_3135
Alternate gene names: 119776267
Gene position: 3724105-3723299 (Counterclockwise)
Preceding gene: 119776270
Following gene: 119776266
Centisome position: 86.48
GC content: 55.89
Gene sequence:
>807_bases ATGACTCAACCCCCAGTCACTCTGGTCATAAAGGATGGCATAGCCTTTGTGACATTAAATCGACCAGAAAAATTCAATGC GTTGAATTATGAGATGTTTTCAGCGATCTGCAGGGTGCAGAAGCTGCTGGCACGAAACAGACAGGTGCGGGTGGTGATAC TGCAAGGCGCCCAGGGGCACTTCTCCTCTGGGCTTGATATCAAGAGTGTCACCCGTAAGCCGCTGCAGCCACTGGGGCTG CTGGCCAAGTGGCTGCCCGGTAATGCCAATCTGGCTCAGCGGGTCTCCATCGGCTGGAGCCGTTTGCCAGTCCCCGTTAT TGCTGTCATCGAAGGCTATTGTTATGGCGGTGGCATGCAGATTGCGCTGGGGGCCGATTTTCGCTTTGCGGCTGAAAACG CCGAGCTGTCCATTATGGAAGCCAAGTGGGGGCTTGTGCCCGACATGGCTGGACTGGTGAGCCTCAGAGGGATACTGCCA AAAGACAAGGCGCTGGAATTGTCGATGACTGCCAGGGTAATCGAGGCCGATGAGGCAGCTTCCCTTGGCTTGGTAACAAG GGTCACGGCTGCGCCTATGGATGACGCCCTCGCCTTTGCCGGGGAGTTAATGACACGTTCGCCTGATGCTCTGGCTGCCA TCAAGGGCTCGATTCATCGTAGTTGGAGTGGCAGTATTCGCCGTTTGCTGGCGCGGGAGTCATGGTATCAGGTGCGTCTG CTGCTGGGGAAAAACTTTGCCATCGCCGCCCGGCGTCAGCAGGGTAAAACCGACAGAGACTACAAACCACGGCAAAAATT CTGGTAA
Upstream 100 bases:
>100_bases AATACTGACGGATGTCAAAAAGTCTGGCTATGTTACGTTGAATAGCCATTTATGCCAAATATGTTAACATCTCTTCTGGA CAGACCAGTTAGGATGCGGC
Downstream 100 bases:
>100_bases TCCACTCACAATCCCCGGGATTGCACTTGCGTGTACCCAACCAAAGCGCCCACAATCGGCGCTTTATTTTTAGGTGTATT TTCAAGGAGCTGAAAAATGA
Product: enoyl-CoA hydratase
Products: NA
Alternate protein names: 3-hydroxypropionyl-CoA dehydratase [H]
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MTQPPVTLVIKDGIAFVTLNRPEKFNALNYEMFSAICRVQKLLARNRQVRVVILQGAQGHFSSGLDIKSVTRKPLQPLGL LAKWLPGNANLAQRVSIGWSRLPVPVIAVIEGYCYGGGMQIALGADFRFAAENAELSIMEAKWGLVPDMAGLVSLRGILP KDKALELSMTARVIEADEAASLGLVTRVTAAPMDDALAFAGELMTRSPDALAAIKGSIHRSWSGSIRRLLARESWYQVRL LLGKNFAIAARRQQGKTDRDYKPRQKFW
Sequences:
>Translated_268_residues MTQPPVTLVIKDGIAFVTLNRPEKFNALNYEMFSAICRVQKLLARNRQVRVVILQGAQGHFSSGLDIKSVTRKPLQPLGL LAKWLPGNANLAQRVSIGWSRLPVPVIAVIEGYCYGGGMQIALGADFRFAAENAELSIMEAKWGLVPDMAGLVSLRGILP KDKALELSMTARVIEADEAASLGLVTRVTAAPMDDALAFAGELMTRSPDALAAIKGSIHRSWSGSIRRLLARESWYQVRL LLGKNFAIAARRQQGKTDRDYKPRQKFW >Mature_267_residues TQPPVTLVIKDGIAFVTLNRPEKFNALNYEMFSAICRVQKLLARNRQVRVVILQGAQGHFSSGLDIKSVTRKPLQPLGLL AKWLPGNANLAQRVSIGWSRLPVPVIAVIEGYCYGGGMQIALGADFRFAAENAELSIMEAKWGLVPDMAGLVSLRGILPK DKALELSMTARVIEADEAASLGLVTRVTAAPMDDALAFAGELMTRSPDALAAIKGSIHRSWSGSIRRLLARESWYQVRLL LGKNFAIAARRQQGKTDRDYKPRQKFW
Specific function: Plays a role in autotrophic carbon fixation via the 3- hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl- CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crot
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI70995211, Length=241, Percent_Identity=29.8755186721992, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI194097323, Length=212, Percent_Identity=26.4150943396226, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI68989263, Length=194, Percent_Identity=28.3505154639175, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI45643119, Length=184, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI260275230, Length=184, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI260274832, Length=184, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI157694516, Length=237, Percent_Identity=24.0506329113924, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI20127408, Length=193, Percent_Identity=28.4974093264249, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI213417737, Length=242, Percent_Identity=24.7933884297521, Blast_Score=73, Evalue=3e-13, Organism=Escherichia coli, GI221142681, Length=211, Percent_Identity=37.4407582938389, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1790281, Length=182, Percent_Identity=29.6703296703297, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787659, Length=225, Percent_Identity=28, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787660, Length=231, Percent_Identity=29.004329004329, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788682, Length=182, Percent_Identity=31.8681318681319, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI87082183, Length=240, Percent_Identity=24.5833333333333, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17540714, Length=232, Percent_Identity=31.4655172413793, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17534483, Length=228, Percent_Identity=30.2631578947368, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25145438, Length=247, Percent_Identity=25.5060728744939, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536985, Length=217, Percent_Identity=26.7281105990783, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17554946, Length=248, Percent_Identity=23.7903225806452, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI25141363, Length=202, Percent_Identity=28.2178217821782, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17558304, Length=195, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17560910, Length=202, Percent_Identity=24.2574257425743, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17549921, Length=182, Percent_Identity=29.1208791208791, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI19920382, Length=256, Percent_Identity=27.734375, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24653139, Length=207, Percent_Identity=32.3671497584541, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI20129971, Length=245, Percent_Identity=24.0816326530612, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24653477, Length=245, Percent_Identity=24.0816326530612, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI21357171, Length=205, Percent_Identity=30.2439024390244, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24650670, Length=188, Percent_Identity=29.2553191489362, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR018376 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.2.1.116 [H]
Molecular weight: Translated: 29499; Mature: 29368
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPPVTLVIKDGIAFVTLNRPEKFNALNYEMFSAICRVQKLLARNRQVRVVILQGAQGH CCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC FSSGLDIKSVTRKPLQPLGLLAKWLPGNANLAQRVSIGWSRLPVPVIAVIEGYCYGGGMQ CCCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHEEHHHCEEECCCEE IALGADFRFAAENAELSIMEAKWGLVPDMAGLVSLRGILPKDKALELSMTARVIEADEAA EEECCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEHHEEEEECCCCC SLGLVTRVTAAPMDDALAFAGELMTRSPDALAAIKGSIHRSWSGSIRRLLARESWYQVRL CCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHEEEE LLGKNFAIAARRQQGKTDRDYKPRQKFW EECCCEEEEEHHHCCCCCCCCCCHHCCC >Mature Secondary Structure TQPPVTLVIKDGIAFVTLNRPEKFNALNYEMFSAICRVQKLLARNRQVRVVILQGAQGH CCCCEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC FSSGLDIKSVTRKPLQPLGLLAKWLPGNANLAQRVSIGWSRLPVPVIAVIEGYCYGGGMQ CCCCCCHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHEEHHHCEEECCCEE IALGADFRFAAENAELSIMEAKWGLVPDMAGLVSLRGILPKDKALELSMTARVIEADEAA EEECCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEHHEEEEECCCCC SLGLVTRVTAAPMDDALAFAGELMTRSPDALAAIKGSIHRSWSGSIRRLLARESWYQVRL CCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHEEEE LLGKNFAIAARRQQGKTDRDYKPRQKFW EECCCEEEEEHHHCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA