Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119776245

Identifier: 119776245

GI number: 119776245

Start: 3689385

End: 3691658

Strand: Reverse

Name: 119776245

Synonym: Sama_3113

Alternate gene names: NA

Gene position: 3691658-3689385 (Counterclockwise)

Preceding gene: 119776250

Following gene: 119776241

Centisome position: 85.73

GC content: 55.94

Gene sequence:

>2274_bases
ATGCAACTCCAATCACTTGCGTTGGCAGCGCTGTTCGGTGCGCTGGCGCTCTCTCCCTCGGCTTATGCCGAACAAATTAA
AATTCAGAATGTGCACTTTGATGCCGACAGCAATCAGCTGATGGTGAAGGCCAAAATCGATGGTCACCACCATGGGCAGG
ACGGTGCCGGTGATGCCTATGTCGAGATAGTGGATGCCGCCAATCCGGGGTTTGTATTGAGCGCCTTTCAAACGCCAAAA
CAGATCCACAGTAAAATCGATGCCGCGAGCCTGGCGTTCATGCCCTGTCAGGTAGGCATAGTGGTGAACGGCGACATGGA
CAATATGGCCATCGCCGATGTGAAAAATGTGCCGGGCAGCTGCGGCGGTTTTGCAGTAACCATTAGGGGGCTTATCACCG
ATGAACCCATTCCTTACGCCACGGTGTCGGTTACGCTCAACGGCAACACCTTTACCACGGTGGCGGATGAAAACGGCGCC
TACAGTCTGGATGTGCTCACCACCAACATAGAGCAGCTGCTGCTGATTGAATCCTCGGCCACCAATAGCGAGACCGGCGA
TAGCATCGACTTTGTCAATCTGGTGGGCAGTTTTGCCAAGGTGCTCAGTGAAGATGACCCCATCAATGTGACCAACCTGA
CCACCGCCAAATACAGCCTGGTGCTGGAAGCCAATGGCGGCGAGCAGCCAACCACACTGGCTGAGCTGGAGCAGGCCGAA
ACCGCGGTGGATGCCACTGAGCTGTTTCAGTTGGCGGCCATCATCAAGCTGATTGTGGATGATCCCGGTTATCAACTGCC
AGAGGGCTATGACAGCATTCTCGACTTTATTGCCGATGAGGGCGCGGTGGACACCTTTGTAGCCAGCACCCCGCCTGAGG
CGCTGGAGCAGGCGCTTGCGGATATTCTGGCCGACAGCAATCTGGTGGCAGGCTTCAGCGCTGCCGATGTGCCCAGCCTC
TATTACGCCATCAGCACCACCAGCCCCGGTTATCTGTCCCGCAGCGGCTCTGCGCTGGAGTTTGACAACGTGGGCATGAC
AGGCACGGCGCTGAGTTTTCTGCAGTGGAACGGCCAGCCCATTAATCAGGACTTCAGCTGGGCCGTAGTAAGTGGTCGCA
TTGAGGTGAGTTACAGTGCGCCACTGATGACCGAAGAGCTATCGGACAGCATCGAGTATGTGACTGACAATCAAGCGGAA
ATCGATGCCTATTATGCAGGTGGCGGCGCGACTGAGAATTTTATTACCCATCGCACCCTTACCCAAAGAGCCTACACCAG
GGTGGTGGATGGCAGTTTGGTGGATGTGGTGTCGGTGGAATCGCGAAGCGAGCTCTCCACACCGCCCATTCCCCTCAGTG
ATGGCACATTCCTCACCATTGCCCAACCGAAGCTGGTGCTGGAAACCGCGAACGTAAATTTCCGCGCCAATTATGACATC
AGCAATATTCCCTTTGTCAGCAATTGCAGCGCGGGGGATACCTGTGTCTCCGGCCTGTGGGCGGGGCAATATCATTATTC
CGAAGGCACGCGGGTGTATGACGACTATGTGCTCCCCAATACCGCCTATGCCGAAGCCATGCAGTTTGTGGCGGATGGCA
CAGTGAGTGGCAAAATCTCCAATGTGAACGCCAACTGGACGGTGGACGGCGAGGGCAGGTTGGTGATCACTTACCCCGAT
GGCATGACCCAAACCAGCCAGATCCTCGATAAGCTCGGCATTGAGCTGGGGGTCTTCTCGGTGTTTGAAAATGCCGGTGA
GCGATTTGCAGCCTACGATATCTGGGTGAAAGGCGATGCCAACTTACAACTGGGTGCGAACGAGTTGCAGCCAAGTTCCG
CCAGCCATTTCTGGGTGGGGGAAATCAACAGCTGGATACCGGGTTCGGTGGATGCTATGGGGCTGCTCAGTTACGAGCGT
TTATGGGGTTGGCAGTTTGGGGCAACCGAGGTGCAAAACACCTATGCCGCTGGCGACTGGAGTGCGCCCGATGGCGATGG
TCTCAGCAGTATGCCCTTTGTTCAGGATGCACCTGTTCCTTACGCAGTGACCGCAGACTATGTGAGTATCTCGCGTTTTC
CTTTTGCCGAGCGCTATTGGTATCCCATCAACAGCCAGGTGATTGATGGCGATAGAGTGTTTTACGTGGTGGAGCGAGAG
GAGCGGAATGGCGAGGCCTATGGCCGTGCCCCGGGCTATCGCACCTTTATTCCGGCGCGGATTAACATAGAGCGCGAGCG
GAATATGGCGGATTACACCAACGTGGCCCGCTGA

Upstream 100 bases:

>100_bases
AGGCTGTGAGGGGTTGTTGTCGCAGGATGCGTTTGCGAAATTCTCAGTGGCATGCGTCTGGTTGACAGGAGGTTACTCTA
AGACGAAAAGGGATATTATC

Downstream 100 bases:

>100_bases
CAGTCCTGTATAAAAAACAACCTCGCCGATGCGAGGTTGTTTTTTTATTAATTGCGAAATCAGCTGTTTGTCAGCTTTTA
CTCTTCGGGCCAGCAGTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 757; Mature: 757

Protein sequence:

>757_residues
MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAYVEIVDAANPGFVLSAFQTPK
QIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGSCGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGA
YSLDVLTTNIEQLLLIESSATNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE
TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALADILADSNLVAGFSAADVPSL
YYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQPINQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAE
IDAYYAGGGATENFITHRTLTQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI
SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKISNVNANWTVDGEGRLVITYPD
GMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDANLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYER
LWGWQFGATEVQNTYAAGDWSAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE
ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR

Sequences:

>Translated_757_residues
MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAYVEIVDAANPGFVLSAFQTPK
QIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGSCGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGA
YSLDVLTTNIEQLLLIESSATNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE
TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALADILADSNLVAGFSAADVPSL
YYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQPINQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAE
IDAYYAGGGATENFITHRTLTQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI
SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKISNVNANWTVDGEGRLVITYPD
GMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDANLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYER
LWGWQFGATEVQNTYAAGDWSAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE
ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR
>Mature_757_residues
MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAYVEIVDAANPGFVLSAFQTPK
QIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGSCGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGA
YSLDVLTTNIEQLLLIESSATNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE
TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALADILADSNLVAGFSAADVPSL
YYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQPINQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAE
IDAYYAGGGATENFITHRTLTQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI
SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKISNVNANWTVDGEGRLVITYPD
GMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDANLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYER
LWGWQFGATEVQNTYAAGDWSAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE
ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 81652; Mature: 81652

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAY
CCHHHHHHHHHHHHHHCCCHHHHHEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEE
VEIVDAANPGFVLSAFQTPKQIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGS
EEEEECCCCCEEEEECCCHHHHHHHCCHHHEEEEEEEEEEEEECCCCCEEEEECCCCCCC
CGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGAYSLDVLTTNIEQLLLIESSA
CCCEEEEEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEECCC
TNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHH
TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALA
HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH
DILADSNLVAGFSAADVPSLYYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQP
HHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHEEEEEEECCCC
INQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAEIDAYYAGGGATENFITHRTL
CCCCCEEEEEEEEEEEEECCCCHHHHHHCCHHEECCCCCEEEEEEECCCCCCCCEEHHHH
TQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEECCCC
SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKIS
CCCCEEECCCCCCHHHHHEECCEEEECCCCEEEECEECCCHHHHHHHHHHHCCCCCCEEE
NVNANWTVDGEGRLVITYPDGMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDA
ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEECCC
NLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYERLWGWQFGATEVQNTYAAGDW
CEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEECCCC
SAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE
CCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCHHEEECCCCEEECCCEEEEEEEEC
ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR
CCCCCCCCCCCCCCEEEEEEEEEHHHCCCHHHHHCCC
>Mature Secondary Structure
MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAY
CCHHHHHHHHHHHHHHCCCHHHHHEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEE
VEIVDAANPGFVLSAFQTPKQIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGS
EEEEECCCCCEEEEECCCHHHHHHHCCHHHEEEEEEEEEEEEECCCCCEEEEECCCCCCC
CGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGAYSLDVLTTNIEQLLLIESSA
CCCEEEEEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEECCC
TNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHH
TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALA
HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH
DILADSNLVAGFSAADVPSLYYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQP
HHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHEEEEEEECCCC
INQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAEIDAYYAGGGATENFITHRTL
CCCCCEEEEEEEEEEEEECCCCHHHHHHCCHHEECCCCCEEEEEEECCCCCCCCEEHHHH
TQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEECCCC
SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKIS
CCCCEEECCCCCCHHHHHEECCEEEECCCCEEEECEECCCHHHHHHHHHHHCCCCCCEEE
NVNANWTVDGEGRLVITYPDGMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDA
ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEECCC
NLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYERLWGWQFGATEVQNTYAAGDW
CEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEECCCC
SAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE
CCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCHHEEECCCCEEECCCEEEEEEEEC
ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR
CCCCCCCCCCCCCCEEEEEEEEEHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA