| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776245
Identifier: 119776245
GI number: 119776245
Start: 3689385
End: 3691658
Strand: Reverse
Name: 119776245
Synonym: Sama_3113
Alternate gene names: NA
Gene position: 3691658-3689385 (Counterclockwise)
Preceding gene: 119776250
Following gene: 119776241
Centisome position: 85.73
GC content: 55.94
Gene sequence:
>2274_bases ATGCAACTCCAATCACTTGCGTTGGCAGCGCTGTTCGGTGCGCTGGCGCTCTCTCCCTCGGCTTATGCCGAACAAATTAA AATTCAGAATGTGCACTTTGATGCCGACAGCAATCAGCTGATGGTGAAGGCCAAAATCGATGGTCACCACCATGGGCAGG ACGGTGCCGGTGATGCCTATGTCGAGATAGTGGATGCCGCCAATCCGGGGTTTGTATTGAGCGCCTTTCAAACGCCAAAA CAGATCCACAGTAAAATCGATGCCGCGAGCCTGGCGTTCATGCCCTGTCAGGTAGGCATAGTGGTGAACGGCGACATGGA CAATATGGCCATCGCCGATGTGAAAAATGTGCCGGGCAGCTGCGGCGGTTTTGCAGTAACCATTAGGGGGCTTATCACCG ATGAACCCATTCCTTACGCCACGGTGTCGGTTACGCTCAACGGCAACACCTTTACCACGGTGGCGGATGAAAACGGCGCC TACAGTCTGGATGTGCTCACCACCAACATAGAGCAGCTGCTGCTGATTGAATCCTCGGCCACCAATAGCGAGACCGGCGA TAGCATCGACTTTGTCAATCTGGTGGGCAGTTTTGCCAAGGTGCTCAGTGAAGATGACCCCATCAATGTGACCAACCTGA CCACCGCCAAATACAGCCTGGTGCTGGAAGCCAATGGCGGCGAGCAGCCAACCACACTGGCTGAGCTGGAGCAGGCCGAA ACCGCGGTGGATGCCACTGAGCTGTTTCAGTTGGCGGCCATCATCAAGCTGATTGTGGATGATCCCGGTTATCAACTGCC AGAGGGCTATGACAGCATTCTCGACTTTATTGCCGATGAGGGCGCGGTGGACACCTTTGTAGCCAGCACCCCGCCTGAGG CGCTGGAGCAGGCGCTTGCGGATATTCTGGCCGACAGCAATCTGGTGGCAGGCTTCAGCGCTGCCGATGTGCCCAGCCTC TATTACGCCATCAGCACCACCAGCCCCGGTTATCTGTCCCGCAGCGGCTCTGCGCTGGAGTTTGACAACGTGGGCATGAC AGGCACGGCGCTGAGTTTTCTGCAGTGGAACGGCCAGCCCATTAATCAGGACTTCAGCTGGGCCGTAGTAAGTGGTCGCA TTGAGGTGAGTTACAGTGCGCCACTGATGACCGAAGAGCTATCGGACAGCATCGAGTATGTGACTGACAATCAAGCGGAA ATCGATGCCTATTATGCAGGTGGCGGCGCGACTGAGAATTTTATTACCCATCGCACCCTTACCCAAAGAGCCTACACCAG GGTGGTGGATGGCAGTTTGGTGGATGTGGTGTCGGTGGAATCGCGAAGCGAGCTCTCCACACCGCCCATTCCCCTCAGTG ATGGCACATTCCTCACCATTGCCCAACCGAAGCTGGTGCTGGAAACCGCGAACGTAAATTTCCGCGCCAATTATGACATC AGCAATATTCCCTTTGTCAGCAATTGCAGCGCGGGGGATACCTGTGTCTCCGGCCTGTGGGCGGGGCAATATCATTATTC CGAAGGCACGCGGGTGTATGACGACTATGTGCTCCCCAATACCGCCTATGCCGAAGCCATGCAGTTTGTGGCGGATGGCA CAGTGAGTGGCAAAATCTCCAATGTGAACGCCAACTGGACGGTGGACGGCGAGGGCAGGTTGGTGATCACTTACCCCGAT GGCATGACCCAAACCAGCCAGATCCTCGATAAGCTCGGCATTGAGCTGGGGGTCTTCTCGGTGTTTGAAAATGCCGGTGA GCGATTTGCAGCCTACGATATCTGGGTGAAAGGCGATGCCAACTTACAACTGGGTGCGAACGAGTTGCAGCCAAGTTCCG CCAGCCATTTCTGGGTGGGGGAAATCAACAGCTGGATACCGGGTTCGGTGGATGCTATGGGGCTGCTCAGTTACGAGCGT TTATGGGGTTGGCAGTTTGGGGCAACCGAGGTGCAAAACACCTATGCCGCTGGCGACTGGAGTGCGCCCGATGGCGATGG TCTCAGCAGTATGCCCTTTGTTCAGGATGCACCTGTTCCTTACGCAGTGACCGCAGACTATGTGAGTATCTCGCGTTTTC CTTTTGCCGAGCGCTATTGGTATCCCATCAACAGCCAGGTGATTGATGGCGATAGAGTGTTTTACGTGGTGGAGCGAGAG GAGCGGAATGGCGAGGCCTATGGCCGTGCCCCGGGCTATCGCACCTTTATTCCGGCGCGGATTAACATAGAGCGCGAGCG GAATATGGCGGATTACACCAACGTGGCCCGCTGA
Upstream 100 bases:
>100_bases AGGCTGTGAGGGGTTGTTGTCGCAGGATGCGTTTGCGAAATTCTCAGTGGCATGCGTCTGGTTGACAGGAGGTTACTCTA AGACGAAAAGGGATATTATC
Downstream 100 bases:
>100_bases CAGTCCTGTATAAAAAACAACCTCGCCGATGCGAGGTTGTTTTTTTATTAATTGCGAAATCAGCTGTTTGTCAGCTTTTA CTCTTCGGGCCAGCAGTCCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 757; Mature: 757
Protein sequence:
>757_residues MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAYVEIVDAANPGFVLSAFQTPK QIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGSCGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGA YSLDVLTTNIEQLLLIESSATNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALADILADSNLVAGFSAADVPSL YYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQPINQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAE IDAYYAGGGATENFITHRTLTQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKISNVNANWTVDGEGRLVITYPD GMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDANLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYER LWGWQFGATEVQNTYAAGDWSAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR
Sequences:
>Translated_757_residues MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAYVEIVDAANPGFVLSAFQTPK QIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGSCGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGA YSLDVLTTNIEQLLLIESSATNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALADILADSNLVAGFSAADVPSL YYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQPINQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAE IDAYYAGGGATENFITHRTLTQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKISNVNANWTVDGEGRLVITYPD GMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDANLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYER LWGWQFGATEVQNTYAAGDWSAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR >Mature_757_residues MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAYVEIVDAANPGFVLSAFQTPK QIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGSCGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGA YSLDVLTTNIEQLLLIESSATNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALADILADSNLVAGFSAADVPSL YYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQPINQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAE IDAYYAGGGATENFITHRTLTQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKISNVNANWTVDGEGRLVITYPD GMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDANLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYER LWGWQFGATEVQNTYAAGDWSAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81652; Mature: 81652
Theoretical pI: Translated: 3.90; Mature: 3.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAY CCHHHHHHHHHHHHHHCCCHHHHHEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEE VEIVDAANPGFVLSAFQTPKQIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGS EEEEECCCCCEEEEECCCHHHHHHHCCHHHEEEEEEEEEEEEECCCCCEEEEECCCCCCC CGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGAYSLDVLTTNIEQLLLIESSA CCCEEEEEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEECCC TNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHH TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALA HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH DILADSNLVAGFSAADVPSLYYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQP HHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHEEEEEEECCCC INQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAEIDAYYAGGGATENFITHRTL CCCCCEEEEEEEEEEEEECCCCHHHHHHCCHHEECCCCCEEEEEEECCCCCCCCEEHHHH TQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEECCCC SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKIS CCCCEEECCCCCCHHHHHEECCEEEECCCCEEEECEECCCHHHHHHHHHHHCCCCCCEEE NVNANWTVDGEGRLVITYPDGMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDA ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEECCC NLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYERLWGWQFGATEVQNTYAAGDW CEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEECCCC SAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE CCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCHHEEECCCCEEECCCEEEEEEEEC ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR CCCCCCCCCCCCCCEEEEEEEEEHHHCCCHHHHHCCC >Mature Secondary Structure MQLQSLALAALFGALALSPSAYAEQIKIQNVHFDADSNQLMVKAKIDGHHHGQDGAGDAY CCHHHHHHHHHHHHHHCCCHHHHHEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCEE VEIVDAANPGFVLSAFQTPKQIHSKIDAASLAFMPCQVGIVVNGDMDNMAIADVKNVPGS EEEEECCCCCEEEEECCCHHHHHHHCCHHHEEEEEEEEEEEEECCCCCEEEEECCCCCCC CGGFAVTIRGLITDEPIPYATVSVTLNGNTFTTVADENGAYSLDVLTTNIEQLLLIESSA CCCEEEEEEEEECCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEEEEEECCC TNSETGDSIDFVNLVGSFAKVLSEDDPINVTNLTTAKYSLVLEANGGEQPTTLAELEQAE CCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHH TAVDATELFQLAAIIKLIVDDPGYQLPEGYDSILDFIADEGAVDTFVASTPPEALEQALA HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHH DILADSNLVAGFSAADVPSLYYAISTTSPGYLSRSGSALEFDNVGMTGTALSFLQWNGQP HHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCHHEEEEEEECCCC INQDFSWAVVSGRIEVSYSAPLMTEELSDSIEYVTDNQAEIDAYYAGGGATENFITHRTL CCCCCEEEEEEEEEEEEECCCCHHHHHHCCHHEECCCCCEEEEEEECCCCCCCCEEHHHH TQRAYTRVVDGSLVDVVSVESRSELSTPPIPLSDGTFLTIAQPKLVLETANVNFRANYDI HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCEEEECCCC SNIPFVSNCSAGDTCVSGLWAGQYHYSEGTRVYDDYVLPNTAYAEAMQFVADGTVSGKIS CCCCEEECCCCCCHHHHHEECCEEEECCCCEEEECEECCCHHHHHHHHHHHCCCCCCEEE NVNANWTVDGEGRLVITYPDGMTQTSQILDKLGIELGVFSVFENAGERFAAYDIWVKGDA ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEEEEECCC NLQLGANELQPSSASHFWVGEINSWIPGSVDAMGLLSYERLWGWQFGATEVQNTYAAGDW CEEECCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCEECCCC SAPDGDGLSSMPFVQDAPVPYAVTADYVSISRFPFAERYWYPINSQVIDGDRVFYVVERE CCCCCCCCCCCCCCCCCCCCEEEEECEEEECCCCCCHHEEECCCCEEECCCEEEEEEEEC ERNGEAYGRAPGYRTFIPARINIERERNMADYTNVAR CCCCCCCCCCCCCCEEEEEEEEEHHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA