| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776181
Identifier: 119776181
GI number: 119776181
Start: 3627076
End: 3627816
Strand: Reverse
Name: 119776181
Synonym: Sama_3049
Alternate gene names: NA
Gene position: 3627816-3627076 (Counterclockwise)
Preceding gene: 119776182
Following gene: 119776179
Centisome position: 84.25
GC content: 51.82
Gene sequence:
>741_bases ATGAAAAAAACCATTCTGGCTGCCTCACTGCTTTCAGCGTTGGCTGCGTTTTCGGCCAACGCGGCCACTGTTGTTGGTTT TAAAGTCGGTGCCGATTACTGGCATGCTGATGCCAAAGGCAATGTGCCTGACGATGCTGGTAACCTGCACGGGTTTGATT ACGACACATCGGGTCAGACAAGTGTTTGGTTTGCCGTTGAGCATCCAGTGCCCTTGCTGCCTAACCTGCTGATCCGTGAA AATCGCCTCGAAGAAGATGGCTTTAACGCCGATGCAACTCTGGCCTTCGGTGGTATTCCTTTCAATGGTGAACTCTATAG CACCATGGATCTGAGCAATACCGACTTTGTGCTTTACTACGAGCTGCTGGACAACGATATAGTGTCGCTGGATGTGGGCG GTGCCTACAAAAAGATGAACGGTTCACTGCGCATCAGCAATGCCTCGGGCGTTGCTGCGCAAAAGGACTTTACCGATGGC ATTATCATGGGTTACGCCAGTGCCGTGGTGGGTATGCCTGGTCTGGGTCTCTATGGCTTTGCCGACCTGATGGCGGGGTT GGATGAAAGCCAGGTGTACGATTACAGTGTGGGTCTGGGCTGGGAGTTTGACGGTATTGCACTGGATACCCGTATCCGCG CTGGCTACCGTGAGTTCAGTTTCGATGTGAATGGCTTCGATGGCATTAGCACTGACAGTAGCTTCAAAGGCTATTTTGCC GGTGTGGAACTGCTTTTCTAA
Upstream 100 bases:
>100_bases TTGGCTATGTGGCTAACCACTCTCTGGTCATGGCCAATTACGTCTCCCGCGCCAATGCGGCGCTCATTGATTTAACCAAT TTGCTTTCACAGGGTTAATT
Downstream 100 bases:
>100_bases GTCAGTATCAGCGCAATAAAAAAACCGCCATCAGGCGGTTTTTTTATACTGGTTGTGATTACTCTGCAGCCTTCAAACCG TTGTTGATGGCAATCACATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MKKTILAASLLSALAAFSANAATVVGFKVGADYWHADAKGNVPDDAGNLHGFDYDTSGQTSVWFAVEHPVPLLPNLLIRE NRLEEDGFNADATLAFGGIPFNGELYSTMDLSNTDFVLYYELLDNDIVSLDVGGAYKKMNGSLRISNASGVAAQKDFTDG IIMGYASAVVGMPGLGLYGFADLMAGLDESQVYDYSVGLGWEFDGIALDTRIRAGYREFSFDVNGFDGISTDSSFKGYFA GVELLF
Sequences:
>Translated_246_residues MKKTILAASLLSALAAFSANAATVVGFKVGADYWHADAKGNVPDDAGNLHGFDYDTSGQTSVWFAVEHPVPLLPNLLIRE NRLEEDGFNADATLAFGGIPFNGELYSTMDLSNTDFVLYYELLDNDIVSLDVGGAYKKMNGSLRISNASGVAAQKDFTDG IIMGYASAVVGMPGLGLYGFADLMAGLDESQVYDYSVGLGWEFDGIALDTRIRAGYREFSFDVNGFDGISTDSSFKGYFA GVELLF >Mature_246_residues MKKTILAASLLSALAAFSANAATVVGFKVGADYWHADAKGNVPDDAGNLHGFDYDTSGQTSVWFAVEHPVPLLPNLLIRE NRLEEDGFNADATLAFGGIPFNGELYSTMDLSNTDFVLYYELLDNDIVSLDVGGAYKKMNGSLRISNASGVAAQKDFTDG IIMGYASAVVGMPGLGLYGFADLMAGLDESQVYDYSVGLGWEFDGIALDTRIRAGYREFSFDVNGFDGISTDSSFKGYFA GVELLF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26384; Mature: 26384
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTILAASLLSALAAFSANAATVVGFKVGADYWHADAKGNVPDDAGNLHGFDYDTSGQT CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCE SVWFAVEHPVPLLPNLLIRENRLEEDGFNADATLAFGGIPFNGELYSTMDLSNTDFVLYY EEEEEECCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEE ELLDNDIVSLDVGGAYKKMNGSLRISNASGVAAQKDFTDGIIMGYASAVVGMPGLGLYGF EECCCCEEEEECCCCHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH ADLMAGLDESQVYDYSVGLGWEFDGIALDTRIRAGYREFSFDVNGFDGISTDSSFKGYFA HHHHCCCCCCCEEEEEECCCCEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEE GVELLF EEEEEC >Mature Secondary Structure MKKTILAASLLSALAAFSANAATVVGFKVGADYWHADAKGNVPDDAGNLHGFDYDTSGQT CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCE SVWFAVEHPVPLLPNLLIRENRLEEDGFNADATLAFGGIPFNGELYSTMDLSNTDFVLYY EEEEEECCCCCCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEEE ELLDNDIVSLDVGGAYKKMNGSLRISNASGVAAQKDFTDGIIMGYASAVVGMPGLGLYGF EECCCCEEEEECCCCHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH ADLMAGLDESQVYDYSVGLGWEFDGIALDTRIRAGYREFSFDVNGFDGISTDSSFKGYFA HHHHCCCCCCCEEEEEECCCCEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEE GVELLF EEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA