| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yheT [H]
Identifier: 119776132
GI number: 119776132
Start: 3573552
End: 3574529
Strand: Direct
Name: yheT [H]
Synonym: Sama_3000
Alternate gene names: 119776132
Gene position: 3573552-3574529 (Clockwise)
Preceding gene: 119776129
Following gene: 119776133
Centisome position: 82.99
GC content: 59.92
Gene sequence:
>978_bases ATGACCTCCCAATTCACGCCTCCCTGGTGGGCCAAGAGTCCCCACATACAAACCATCTTGCCGGTGCTGACCAAGCGCCC CACACCAGCGCTGCGCCGTGAACGCCTGGAATTGGCAGACGGTGATTTCCTCGATTTGGATTGGCTGGGCCAGCCCGATG AGGGCAAGCCGATTGTGATGGCCATCCATGGGCTGGAAGGCAGTGCCCGTTCCCACTACGCCAGCAGACTGTTACATGCC TGTGAGGCCCGGGGACTTGCCGCCGTGGTGCATCACCATCGCAGCTGCTCCGGTGAGTCTAATCGGCTGCCGCGTTCGTA CCACAGTGGCGATACCCAGGACGTGGCCCACAGCATTAACCACATTCGTGCCCGTTATCCAAACAGCCCCATACTGGCCG TGGGTTACAGCCTGGGCGGCAATGTCCTCGGCAAGTTTTTGGGTGAGCAACAAAGTGATAGCCCCATCGCCCGCGCCGTG GTGGTGTCGGCGCCGCTGCGCCTGGCGGCCTGTGCCAAACGCCTGGAAAAAGGCTTCTCCCGGGTGTATCAGTCATATCT CATTCGTCAGCTTCAGGCCAAGCTTGCCTTTAAAGTCACAGACACTCGCCTGGGGCCCGCGATGCCGGTTCACGCCCATG AAGTGGCACAACTCTCGACCTTTTATGACTTCGATGACAAGGTCACGGCGCCACTGCACGGTTTCACCGATGTGCACGAC TACTATGACAGGGCCAGTGGCCTGCCATTTCTGCGACGTATCACCACGCCCACCCTGGTACTCCATGCCGCGGATGACCC CTTTATGACCGACGCGGTCATCCCCCGCGCCGATGAGCTTTCCAGCGCCGTGGAATATGAGCTTAACCGCTACGGCGGCC ACGTGGGCTTTATCAATGGTGGCAGCCCGTGGCGGCCACAGTTTTACCTCGAGCGGCGTATCCTGGATTTTTTGCAGGCC GTGCCTGCTGCAAAATAA
Upstream 100 bases:
>100_bases AGGAAGAGACAACAGCAAGAGGTTTCTGCCTTGACCTGCTCGTGGTTATAATGGCTCAAATTAAACATACGTTTTATTTC AGGGCAACCCTTTCCAGCCA
Downstream 100 bases:
>100_bases GGACCGCAGATGCTCATTCCCTACGACGCCTTAAGCCAATTGCCATCCGATACCCTGAATAACCTTATCCGTGAATACCT GCTGACTCAGGTGGAAGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MTSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVMAIHGLEGSARSHYASRLLHA CEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSINHIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAV VVSAPLRLAACAKRLEKGFSRVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFINGGSPWRPQFYLERRILDFLQA VPAAK
Sequences:
>Translated_325_residues MTSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVMAIHGLEGSARSHYASRLLHA CEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSINHIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAV VVSAPLRLAACAKRLEKGFSRVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFINGGSPWRPQFYLERRILDFLQA VPAAK >Mature_324_residues TSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVMAIHGLEGSARSHYASRLLHAC EARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSINHIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAVV VSAPLRLAACAKRLEKGFSRVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHDY YDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFINGGSPWRPQFYLERRILDFLQAV PAAK
Specific function: Unknown
COG id: COG0429
COG function: function code R; Predicted hydrolase of the alpha/beta-hydrolase fold
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. AB hydrolase 4 family [H]
Homologues:
Organism=Homo sapiens, GI23397663, Length=331, Percent_Identity=30.5135951661631, Blast_Score=165, Evalue=5e-41, Organism=Homo sapiens, GI194578891, Length=332, Percent_Identity=32.2289156626506, Blast_Score=151, Evalue=9e-37, Organism=Homo sapiens, GI23397659, Length=346, Percent_Identity=26.3005780346821, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI23397661, Length=346, Percent_Identity=26.3005780346821, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI269315865, Length=305, Percent_Identity=29.1803278688525, Blast_Score=94, Evalue=1e-19, Organism=Escherichia coli, GI1789752, Length=329, Percent_Identity=44.6808510638298, Blast_Score=272, Evalue=3e-74, Organism=Caenorhabditis elegans, GI17566110, Length=311, Percent_Identity=28.2958199356913, Blast_Score=127, Evalue=5e-30, Organism=Caenorhabditis elegans, GI71985405, Length=311, Percent_Identity=27.6527331189711, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI71985413, Length=198, Percent_Identity=27.7777777777778, Blast_Score=82, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6323866, Length=260, Percent_Identity=29.2307692307692, Blast_Score=112, Evalue=7e-26, Organism=Saccharomyces cerevisiae, GI6325162, Length=288, Percent_Identity=28.4722222222222, Blast_Score=99, Evalue=8e-22, Organism=Saccharomyces cerevisiae, GI6319655, Length=266, Percent_Identity=24.812030075188, Blast_Score=85, Evalue=1e-17, Organism=Drosophila melanogaster, GI281398151, Length=331, Percent_Identity=28.0966767371601, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI24652003, Length=331, Percent_Identity=28.0966767371601, Blast_Score=134, Evalue=7e-32, Organism=Drosophila melanogaster, GI24581365, Length=333, Percent_Identity=26.1261261261261, Blast_Score=105, Evalue=5e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012020 - InterPro: IPR000073 - InterPro: IPR000952 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: NA
Molecular weight: Translated: 36146; Mature: 36015
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS01133 UPF0017
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVM CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEE AIHGLEGSARSHYASRLLHACEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSIN EEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH HIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAVVVSAPLRLAACAKRLEKGFS HHHHCCCCCCEEEEECHHCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH RVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFING HHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC GSPWRPQFYLERRILDFLQAVPAAK CCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TSQFTPPWWAKSPHIQTILPVLTKRPTPALRRERLELADGDFLDLDWLGQPDEGKPIVM CCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEE AIHGLEGSARSHYASRLLHACEARGLAAVVHHHRSCSGESNRLPRSYHSGDTQDVAHSIN EEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH HIRARYPNSPILAVGYSLGGNVLGKFLGEQQSDSPIARAVVVSAPLRLAACAKRLEKGFS HHHHCCCCCCEEEEECHHCHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH RVYQSYLIRQLQAKLAFKVTDTRLGPAMPVHAHEVAQLSTFYDFDDKVTAPLHGFTDVHD HHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH YYDRASGLPFLRRITTPTLVLHAADDPFMTDAVIPRADELSSAVEYELNRYGGHVGFING HHHHHCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECC GSPWRPQFYLERRILDFLQAVPAAK CCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]