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The map label for this gene is 119776130

Identifier: 119776130

GI number: 119776130

Start: 3571165

End: 3572856

Strand: Reverse

Name: 119776130

Synonym: Sama_2998

Alternate gene names: NA

Gene position: 3572856-3571165 (Counterclockwise)

Preceding gene: 119776131

Following gene: 119776127

Centisome position: 82.97

GC content: 57.39

Gene sequence:

>1692_bases
ATGGCAATTGTTGATCCTATTTATGAAGGGCTGGCGTCGGGTTGGAAACATCTGGACGGTGCTCTGTATCAGGGCAGTGA
TAAACCACAGACCCTCGAAGCCGATGTGGTGATCATTGGTACGGGTGCCGGCGGCGGTGTGGCGGCCGAAATCCTGACTC
AGGCCGGGCTGTCGGTGATCATGGTGGAAAAAGGCCCACTGCGTTCCTCCCGGGATTTCGATATGGAAGAACGTACCGCG
TATCCCAATCTGTACCAGCAGGCCGCCGCCATGAAAACCGCCGACAAGGCGATAGGTATCTTTCAGGGCCGCGCTGTGGG
CGGCTCAACCACGGTAAACTGGACCACGTCCATACGTACTCCCCCCGAAACCCTGGCCTACTGGCAATCTGAGTTTGCGG
TACAGGGCCTGTCAGCCAATGAGCTTGAGCCCTGGTTTGAACAGATGGAGTCCAGGCTCAACATCAGTCAGTGGGCGTTC
GAACCCAATAGAAATAATGGCATGCTGCGCCGTGGCTGCGAGCAACTGGGGTGGGACTACACAGTTATCAAGCGTAACGT
GCTTGGCTGCTGGAATACCGGCTATTGCGGTATGGGCTGCCCGGTTAATGCCAAGCAATCCATGTTGGTCACCACTATTC
CCGCGGCACTGTCGGCGGGGGCAACCCTGTTGAGTCGTTTTGAGGCCACTCAGATAGAGCATCATGCTGACAAGGTCTTT
GGCATTTGGGTGCGGGCGCTGGACCAGAATTTGGCTTTGAGGCCCGAAAAACTCATGCTCAAGGCGCGGCACTATATTCT
TGCCGGTGGCGCGATTCACACCCCGGTGCTGATGATGCGCTCCGGGCTTGCCGACCCCATGCAGCTTTTGGGGAAACGTA
CTTTTTTACATCCCACGGTACTCTCGGGGGCCGTCTTTGATGAGGCTATCAATGGCCACAGCGGCGCACCCCAGTCGATT
TATTCGGATCAGTTTGTCTGGCGAGATGGCGCAGCCGGTGAACTGGGTTACAAGCTTGAAGTGCCGCCCATTCATCCAGT
GCTGATTGCGTCCAAAACGTTGGGCTTTGGCAAGAGCCATGCGGAATTGATGGCCAACTTCAATCAGCTTCAGGTGGTAA
TAGCCCTGGTGCGTGACGGATTTCATTCCCAGAGCCAGGGCGGCAGCGTCGGTCTGGAAGGCAAGGGCTTTAAACTCGAC
TATCCGCTGACTGAGCCTTTCTGGCGTGCGGCCAGAGCCGCCTTTGCCAGCATGGCCGAGCTGCAATTTGCCGCCGGTGC
CCGCAGGGTGCTGCCCATCAGTGAAGGCGTGGGCTATTTGAATTCCTGGCAGGAGGCCAAGGCCGCCATTGCCGATATGT
CGCTGGCGCCGCTCAAAACCGTGGTGGCCTCGGCTCACGTGATGGGTGGTTGTCCCATGGGTGAAGATAAGACTAAGACC
ATGGTCGACAGTCTTGGCCAAAGCCACTATCTGGAAAACCTGTCGGTGATGGATGGCTCGGTATTTCCAACCAGTTTGGG
GGCTAATCCGCAGCTGTCGATTTATGGCATGGTGGCTAAAAACGCCACGGCTCTGGCGGGGCGTTTGGCGCCGGGGAGCA
CACCGCCCCAAACAGCACCTGATGCCGCCCCGAAGGCAGATTTTGTGACGGAAACGGCGGCGCAAACTATCTCTGCTGCA
GCACAGCCGTAA

Upstream 100 bases:

>100_bases
GGAGCTGGTATTGGCGAGTTTCTACAGCTGCCCTGAGCACTGGACCTTGCTCAATTACGCCAAGCCTGAACTGCCGGGCA
TCAAGTCTTAAGGAGCCCTG

Downstream 100 bases:

>100_bases
TTGCTGACAGCGGCAACGTCCTGAGGCAGAAGCCAGCCTCGATACACATGATTGAATGGTCCGTAAAAAAAGCGCCTCAG
GGCGCTTTTTTATGCTTATT

Product: GMC family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MAIVDPIYEGLASGWKHLDGALYQGSDKPQTLEADVVIIGTGAGGGVAAEILTQAGLSVIMVEKGPLRSSRDFDMEERTA
YPNLYQQAAAMKTADKAIGIFQGRAVGGSTTVNWTTSIRTPPETLAYWQSEFAVQGLSANELEPWFEQMESRLNISQWAF
EPNRNNGMLRRGCEQLGWDYTVIKRNVLGCWNTGYCGMGCPVNAKQSMLVTTIPAALSAGATLLSRFEATQIEHHADKVF
GIWVRALDQNLALRPEKLMLKARHYILAGGAIHTPVLMMRSGLADPMQLLGKRTFLHPTVLSGAVFDEAINGHSGAPQSI
YSDQFVWRDGAAGELGYKLEVPPIHPVLIASKTLGFGKSHAELMANFNQLQVVIALVRDGFHSQSQGGSVGLEGKGFKLD
YPLTEPFWRAARAAFASMAELQFAAGARRVLPISEGVGYLNSWQEAKAAIADMSLAPLKTVVASAHVMGGCPMGEDKTKT
MVDSLGQSHYLENLSVMDGSVFPTSLGANPQLSIYGMVAKNATALAGRLAPGSTPPQTAPDAAPKADFVTETAAQTISAA
AQP

Sequences:

>Translated_563_residues
MAIVDPIYEGLASGWKHLDGALYQGSDKPQTLEADVVIIGTGAGGGVAAEILTQAGLSVIMVEKGPLRSSRDFDMEERTA
YPNLYQQAAAMKTADKAIGIFQGRAVGGSTTVNWTTSIRTPPETLAYWQSEFAVQGLSANELEPWFEQMESRLNISQWAF
EPNRNNGMLRRGCEQLGWDYTVIKRNVLGCWNTGYCGMGCPVNAKQSMLVTTIPAALSAGATLLSRFEATQIEHHADKVF
GIWVRALDQNLALRPEKLMLKARHYILAGGAIHTPVLMMRSGLADPMQLLGKRTFLHPTVLSGAVFDEAINGHSGAPQSI
YSDQFVWRDGAAGELGYKLEVPPIHPVLIASKTLGFGKSHAELMANFNQLQVVIALVRDGFHSQSQGGSVGLEGKGFKLD
YPLTEPFWRAARAAFASMAELQFAAGARRVLPISEGVGYLNSWQEAKAAIADMSLAPLKTVVASAHVMGGCPMGEDKTKT
MVDSLGQSHYLENLSVMDGSVFPTSLGANPQLSIYGMVAKNATALAGRLAPGSTPPQTAPDAAPKADFVTETAAQTISAA
AQP
>Mature_562_residues
AIVDPIYEGLASGWKHLDGALYQGSDKPQTLEADVVIIGTGAGGGVAAEILTQAGLSVIMVEKGPLRSSRDFDMEERTAY
PNLYQQAAAMKTADKAIGIFQGRAVGGSTTVNWTTSIRTPPETLAYWQSEFAVQGLSANELEPWFEQMESRLNISQWAFE
PNRNNGMLRRGCEQLGWDYTVIKRNVLGCWNTGYCGMGCPVNAKQSMLVTTIPAALSAGATLLSRFEATQIEHHADKVFG
IWVRALDQNLALRPEKLMLKARHYILAGGAIHTPVLMMRSGLADPMQLLGKRTFLHPTVLSGAVFDEAINGHSGAPQSIY
SDQFVWRDGAAGELGYKLEVPPIHPVLIASKTLGFGKSHAELMANFNQLQVVIALVRDGFHSQSQGGSVGLEGKGFKLDY
PLTEPFWRAARAAFASMAELQFAAGARRVLPISEGVGYLNSWQEAKAAIADMSLAPLKTVVASAHVMGGCPMGEDKTKTM
VDSLGQSHYLENLSVMDGSVFPTSLGANPQLSIYGMVAKNATALAGRLAPGSTPPQTAPDAAPKADFVTETAAQTISAAA
QP

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: NA

Molecular weight: Translated: 60282; Mature: 60151

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIVDPIYEGLASGWKHLDGALYQGSDKPQTLEADVVIIGTGAGGGVAAEILTQAGLSVI
CCCHHHHHHHHHHHHHHHCCHHCCCCCCCCEEECCEEEEECCCCCHHHHHHHHHCCCEEE
MVEKGPLRSSRDFDMEERTAYPNLYQQAAAMKTADKAIGIFQGRAVGGSTTVNWTTSIRT
EEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCC
PPETLAYWQSEFAVQGLSANELEPWFEQMESRLNISQWAFEPNRNNGMLRRGCEQLGWDY
CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHCCCE
TVIKRNVLGCWNTGYCGMGCPVNAKQSMLVTTIPAALSAGATLLSRFEATQIEHHADKVF
EEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIWVRALDQNLALRPEKLMLKARHYILAGGAIHTPVLMMRSGLADPMQLLGKRTFLHPTV
HHHHHHHCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCHHHHHCCHHHCCHHH
LSGAVFDEAINGHSGAPQSIYSDQFVWRDGAAGELGYKLEVPPIHPVLIASKTLGFGKSH
HHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEHHHCCCCCHH
AELMANFNQLQVVIALVRDGFHSQSQGGSVGLEGKGFKLDYPLTEPFWRAARAAFASMAE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
LQFAAGARRVLPISEGVGYLNSWQEAKAAIADMSLAPLKTVVASAHVMGGCPMGEDKTKT
HHHHCCCCEEEEHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
MVDSLGQSHYLENLSVMDGSVFPTSLGANPQLSIYGMVAKNATALAGRLAPGSTPPQTAP
HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCC
DAAPKADFVTETAAQTISAAAQP
CCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AIVDPIYEGLASGWKHLDGALYQGSDKPQTLEADVVIIGTGAGGGVAAEILTQAGLSVI
CCHHHHHHHHHHHHHHHCCHHCCCCCCCCEEECCEEEEECCCCCHHHHHHHHHCCCEEE
MVEKGPLRSSRDFDMEERTAYPNLYQQAAAMKTADKAIGIFQGRAVGGSTTVNWTTSIRT
EEECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEEEECCC
PPETLAYWQSEFAVQGLSANELEPWFEQMESRLNISQWAFEPNRNNGMLRRGCEQLGWDY
CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCHHHHHHHHHCCCE
TVIKRNVLGCWNTGYCGMGCPVNAKQSMLVTTIPAALSAGATLLSRFEATQIEHHADKVF
EEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIWVRALDQNLALRPEKLMLKARHYILAGGAIHTPVLMMRSGLADPMQLLGKRTFLHPTV
HHHHHHHCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCHHHHHCCHHHCCHHH
LSGAVFDEAINGHSGAPQSIYSDQFVWRDGAAGELGYKLEVPPIHPVLIASKTLGFGKSH
HHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCCEEEEEHHHCCCCCHH
AELMANFNQLQVVIALVRDGFHSQSQGGSVGLEGKGFKLDYPLTEPFWRAARAAFASMAE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
LQFAAGARRVLPISEGVGYLNSWQEAKAAIADMSLAPLKTVVASAHVMGGCPMGEDKTKT
HHHHCCCCEEEEHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHH
MVDSLGQSHYLENLSVMDGSVFPTSLGANPQLSIYGMVAKNATALAGRLAPGSTPPQTAP
HHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCCCCCCCCC
DAAPKADFVTETAAQTISAAAQP
CCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]