| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yheV [C]
Identifier: 119776127
GI number: 119776127
Start: 3568280
End: 3568477
Strand: Reverse
Name: yheV [C]
Synonym: Sama_2995
Alternate gene names: 119776127
Gene position: 3568477-3568280 (Counterclockwise)
Preceding gene: 119776130
Following gene: 119776126
Centisome position: 82.87
GC content: 55.05
Gene sequence:
>198_bases ATGAGTATTTCCAGAAAACGATTTGTGGCCGGTGCCAAGTGCCCCAAGTGCGGTGCGAGCGACAGCATAGTGCTGTTCAA AGACCATGGGGTTGAAACCGTGGAATGTGTCGAGTGCGATTATCGCGAGCAGCAGGCCGAAGAAAAGGTCGCCCAGAAGG CGTCCGGTGCCGTGATTGGGGTGTTTAAACCGGACTGA
Upstream 100 bases:
>100_bases TAACCAAGTTCAGGCCCGGCATCCAGCGCGAAGCCGGGATTAGGGTTGCCTGCGTAAGCTGTGGCACAATAGCGGCATTC TTTTGTTGGATTTTCCCTGT
Downstream 100 bases:
>100_bases TATTTCGATTTTATCGATATGTTAAGCCGCTTCTTTGCGATGTTCTTTCGTATTGGCGGGCGCTATGCTGTCATCATTGC ACTGGAGAACTCGCCATGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 65; Mature: 64
Protein sequence:
>65_residues MSISRKRFVAGAKCPKCGASDSIVLFKDHGVETVECVECDYREQQAEEKVAQKASGAVIGVFKPD
Sequences:
>Translated_65_residues MSISRKRFVAGAKCPKCGASDSIVLFKDHGVETVECVECDYREQQAEEKVAQKASGAVIGVFKPD >Mature_64_residues SISRKRFVAGAKCPKCGASDSIVLFKDHGVETVECVECDYREQQAEEKVAQKASGAVIGVFKPD
Specific function: Unknown
COG id: COG3529
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082247, Length=63, Percent_Identity=44.4444444444444, Blast_Score=62, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 7048; Mature: 6917
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 6.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISRKRFVAGAKCPKCGASDSIVLFKDHGVETVECVECDYREQQAEEKVAQKASGAVIG CCCCCCCEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE VFKPD EECCC >Mature Secondary Structure SISRKRFVAGAKCPKCGASDSIVLFKDHGVETVECVECDYREQQAEEKVAQKASGAVIG CCCCCCEECCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE VFKPD EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA