| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is csgA [C]
Identifier: 119776078
GI number: 119776078
Start: 3502428
End: 3502862
Strand: Direct
Name: csgA [C]
Synonym: Sama_2946
Alternate gene names: 119776078
Gene position: 3502428-3502862 (Clockwise)
Preceding gene: 119776072
Following gene: 119776079
Centisome position: 81.34
GC content: 52.87
Gene sequence:
>435_bases GTGTCTTACTGCAAATCGCTGGTTTTAAGCGCTTCCCTCCTGCTTTGCTGCCCCGCCGTGTTGGCTGACACGCCAACATC TGGGGTAGGCGACGAGATGTCGCTTTCCGTCCCCCTGCAAACTCTGCTGGAGTCCAGCGGACGGGACAACCTCATCGATT TGTTTCAGATAGGGGTGCAAAACGAGGCCATGGTTGCCCAGTCGGGCGATTCCAACAGCCTTATTGTCACCCAAATCGGC GTCGCAAATCAGGCTCTGGTGCGTCAGCTGGGCACAGACAATGAGGTGGATTTGTTTCAGGCAGGAAACCACAACAGCGC TGAGATAACCCAGATAGGAGACAACAATCTGGTGCAGCTCAAGCAGTTGGGCAGTGCGAATTTTTCTATTCAACAAATTG GCGATGGAGCATCTATCGCCGTGACTCAATATTAA
Upstream 100 bases:
>100_bases TTTCTTCCGATTGTGACTTAGGTCTCAGAACCTTAACTTGGTGCTGTATTTTTGCCGAGCCGTCGGCTTTGGAAGTTTAC GCATCGCAAAGGAGTGTCGG
Downstream 100 bases:
>100_bases CAGGGAGCGTCACATGAAATCACAAGCGAAGAAGTCACTCTTGGCTTTAGCCATCACCGCGGGTATCGGCATGTCAGCGC AGGCCTTTGCCAGCGATATC
Product: minor curlin subunit CsgB
Products: NA
Alternate protein names: Minor Curlin Subunit CsgB
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MSYCKSLVLSASLLLCCPAVLADTPTSGVGDEMSLSVPLQTLLESSGRDNLIDLFQIGVQNEAMVAQSGDSNSLIVTQIG VANQALVRQLGTDNEVDLFQAGNHNSAEITQIGDNNLVQLKQLGSANFSIQQIGDGASIAVTQY
Sequences:
>Translated_144_residues MSYCKSLVLSASLLLCCPAVLADTPTSGVGDEMSLSVPLQTLLESSGRDNLIDLFQIGVQNEAMVAQSGDSNSLIVTQIG VANQALVRQLGTDNEVDLFQAGNHNSAEITQIGDNNLVQLKQLGSANFSIQQIGDGASIAVTQY >Mature_143_residues SYCKSLVLSASLLLCCPAVLADTPTSGVGDEMSLSVPLQTLLESSGRDNLIDLFQIGVQNEAMVAQSGDSNSLIVTQIGV ANQALVRQLGTDNEVDLFQAGNHNSAEITQIGDNNLVQLKQLGSANFSIQQIGDGASIAVTQY
Specific function: Curlin Is The Structural Subunit Of The Curli. Curli Are Coiled Surface Structures That Assemble Preferentially At Growth Temperatures Below 37 Degrees Celsius. Curli Can Bind To Fibronectin. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15099; Mature: 14968
Theoretical pI: Translated: 3.77; Mature: 3.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYCKSLVLSASLLLCCPAVLADTPTSGVGDEMSLSVPLQTLLESSGRDNLIDLFQIGVQ CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHCCCCCCHHHHHHHCCC NEAMVAQSGDSNSLIVTQIGVANQALVRQLGTDNEVDLFQAGNHNSAEITQIGDNNLVQL CCEEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCEEEE KQLGSANFSIQQIGDGASIAVTQY EECCCCCCEEEECCCCCEEEEEEC >Mature Secondary Structure SYCKSLVLSASLLLCCPAVLADTPTSGVGDEMSLSVPLQTLLESSGRDNLIDLFQIGVQ HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHCCCCCCHHHHHHHCCC NEAMVAQSGDSNSLIVTQIGVANQALVRQLGTDNEVDLFQAGNHNSAEITQIGDNNLVQL CCEEEEECCCCCCEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCEEEE KQLGSANFSIQQIGDGASIAVTQY EECCCCCCEEEECCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA