Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775935

Identifier: 119775935

GI number: 119775935

Start: 3342175

End: 3342702

Strand: Direct

Name: 119775935

Synonym: Sama_2803

Alternate gene names: NA

Gene position: 3342175-3342702 (Clockwise)

Preceding gene: 119775933

Following gene: 119775939

Centisome position: 77.61

GC content: 56.44

Gene sequence:

>528_bases
ATGTTGAGAACCCTTACCCTGTCACTCACCCTGTTGGTGCTTGCGGCCTGCCAGAGCGGCCCAAAAACCGACTACGACCC
CAACACCAACTTTGCCGCAATGAAGCACTTTGCCTTGCAAACCCCGGAACAAACCAATGACCCCCTGAGCTCAGAACGTA
TCGCCATGGCGGTGACCCAAACCCTGATGGCCAAGGGGATGAGCCAAAGCGATACCCCGGATTTCAAAGTGACCTGGGTG
TTTCAAACCGGCAGTAAGCCAACAAGTTCGGGTTTGTCCATTGGGTTGGGCACTGGCTCATGGGGCCATTCAGGGGGCGT
CAGTGTGGGCACCAGCGTTGGCCTGCCCTTAGGGGGCGAGAAACAATACCAGCAGATTCAGATTGATATATTGACTGCCA
GTGGCGATCGCCTGCTGTGGCGTGGCAGCGACAGCTTTGAGTTCAGCGACGGTGGTGAAGACAAGGCCGAGGCGACCCAA
AAGACGGTAGCCAAAATATTGGCCGCCTTTCCACCCACGCCGAAGTAA

Upstream 100 bases:

>100_bases
TATAACATCAAACCCTGAAAAAGGCGAAATAATCTACAACACACAGGCTTGCCATGACTAGCGCCAAGGCGCACAGTAGG
TAAAAAACGGGAGAATAACC

Downstream 100 bases:

>100_bases
CGCCCGCTGGCGGTACCCGCATGACATTAATAGGGCAAGGCTCGCATGAATAAGGCAAGGCTCAAAGCCTTAATTGCCGC
CGCGTAAAAAGCCACCCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MLRTLTLSLTLLVLAACQSGPKTDYDPNTNFAAMKHFALQTPEQTNDPLSSERIAMAVTQTLMAKGMSQSDTPDFKVTWV
FQTGSKPTSSGLSIGLGTGSWGHSGGVSVGTSVGLPLGGEKQYQQIQIDILTASGDRLLWRGSDSFEFSDGGEDKAEATQ
KTVAKILAAFPPTPK

Sequences:

>Translated_175_residues
MLRTLTLSLTLLVLAACQSGPKTDYDPNTNFAAMKHFALQTPEQTNDPLSSERIAMAVTQTLMAKGMSQSDTPDFKVTWV
FQTGSKPTSSGLSIGLGTGSWGHSGGVSVGTSVGLPLGGEKQYQQIQIDILTASGDRLLWRGSDSFEFSDGGEDKAEATQ
KTVAKILAAFPPTPK
>Mature_175_residues
MLRTLTLSLTLLVLAACQSGPKTDYDPNTNFAAMKHFALQTPEQTNDPLSSERIAMAVTQTLMAKGMSQSDTPDFKVTWV
FQTGSKPTSSGLSIGLGTGSWGHSGGVSVGTSVGLPLGGEKQYQQIQIDILTASGDRLLWRGSDSFEFSDGGEDKAEATQ
KTVAKILAAFPPTPK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18541; Mature: 18541

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRTLTLSLTLLVLAACQSGPKTDYDPNTNFAAMKHFALQTPEQTNDPLSSERIAMAVTQ
CCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TLMAKGMSQSDTPDFKVTWVFQTGSKPTSSGLSIGLGTGSWGHSGGVSVGTSVGLPLGGE
HHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
KQYQQIQIDILTASGDRLLWRGSDSFEFSDGGEDKAEATQKTVAKILAAFPPTPK
CCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLRTLTLSLTLLVLAACQSGPKTDYDPNTNFAAMKHFALQTPEQTNDPLSSERIAMAVTQ
CCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
TLMAKGMSQSDTPDFKVTWVFQTGSKPTSSGLSIGLGTGSWGHSGGVSVGTSVGLPLGGE
HHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
KQYQQIQIDILTASGDRLLWRGSDSFEFSDGGEDKAEATQKTVAKILAAFPPTPK
CCCEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA