| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775899
Identifier: 119775899
GI number: 119775899
Start: 3307913
End: 3308335
Strand: Direct
Name: 119775899
Synonym: Sama_2767
Alternate gene names: NA
Gene position: 3307913-3308335 (Clockwise)
Preceding gene: 119775897
Following gene: 119775902
Centisome position: 76.82
GC content: 54.85
Gene sequence:
>423_bases ATGGAAACCCGCATGATCAAGAAATTTGCCCTGCTGGCCGGCGCACTGACGCTGGTGGGCTGCCAATCATCCCCTCCTCT TGACGCTGTTGAAGTCAATTTGCTCGGAAGCTGGCACATAGAACAGGTGATGGATCGCCCAGTCATCGACTACAGCCCTG CAAAACTGGTGTTTGAGGAGGGCAATAAACTCCTTGGCAACAACAGCTGCAATAACTTTTTTGGCAGTTTTGAACTGCAA GGCCATCAGTTGCTGCTGACCCCTTCGGGCACCACCCGCAAGGCCTGTGTCGATGCCCTGATGGATCAGGAAGCCAGAGT CGCCGACGCCCTGCCCAAGGTCAGAAAGCTGGCCGATGACCAAGGTAAGTTGCGCCTGCTCGACAGTGAAGGACAAGTGC TGCTGATTTTAAGCCGCCTCTGA
Upstream 100 bases:
>100_bases CAATGCAGGATTTTCAGAAATTTCATTACACTTTTCATCTGTTCCACCACATAATCGCCCCTGAACGACGGCATGCCGAC GTCGCCCGTCAAAGTACAGT
Downstream 100 bases:
>100_bases GCCCCCGGCTGGCCAAACGTTATTGACCAGGCCCATTTGGCGAGGTCTGCCAGACGCACTGATGCATCCGAGATCACGTA TCCGAACTCACGCATCCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 140; Mature: 140
Protein sequence:
>140_residues METRMIKKFALLAGALTLVGCQSSPPLDAVEVNLLGSWHIEQVMDRPVIDYSPAKLVFEEGNKLLGNNSCNNFFGSFELQ GHQLLLTPSGTTRKACVDALMDQEARVADALPKVRKLADDQGKLRLLDSEGQVLLILSRL
Sequences:
>Translated_140_residues METRMIKKFALLAGALTLVGCQSSPPLDAVEVNLLGSWHIEQVMDRPVIDYSPAKLVFEEGNKLLGNNSCNNFFGSFELQ GHQLLLTPSGTTRKACVDALMDQEARVADALPKVRKLADDQGKLRLLDSEGQVLLILSRL >Mature_140_residues METRMIKKFALLAGALTLVGCQSSPPLDAVEVNLLGSWHIEQVMDRPVIDYSPAKLVFEEGNKLLGNNSCNNFFGSFELQ GHQLLLTPSGTTRKACVDALMDQEARVADALPKVRKLADDQGKLRLLDSEGQVLLILSRL
Specific function: Unknown
COG id: COG3187
COG function: function code O; Heat shock protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15365; Mature: 15365
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METRMIKKFALLAGALTLVGCQSSPPLDAVEVNLLGSWHIEQVMDRPVIDYSPAKLVFEE CCCHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCEEEEEC GNKLLGNNSCNNFFGSFELQGHQLLLTPSGTTRKACVDALMDQEARVADALPKVRKLADD CCEEECCCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC QGKLRLLDSEGQVLLILSRL CCCEEEECCCCCEEEEEECC >Mature Secondary Structure METRMIKKFALLAGALTLVGCQSSPPLDAVEVNLLGSWHIEQVMDRPVIDYSPAKLVFEE CCCHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCCEEEEEC GNKLLGNNSCNNFFGSFELQGHQLLLTPSGTTRKACVDALMDQEARVADALPKVRKLADD CCEEECCCCCCCCCCCEEECCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC QGKLRLLDSEGQVLLILSRL CCCEEEECCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA