| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is metK
Identifier: 119775892
GI number: 119775892
Start: 3301224
End: 3302375
Strand: Direct
Name: metK
Synonym: Sama_2760
Alternate gene names: 119775892
Gene position: 3301224-3302375 (Clockwise)
Preceding gene: 119775883
Following gene: 119775896
Centisome position: 76.66
GC content: 55.73
Gene sequence:
>1152_bases ATGGCAAAACACTTGTTTACCTCTGAGTCGGTCTCAGAAGGTCATCCCGATAAAATTGCAGACCAGATTTCCGATGCTGT GCTCGATGCAATCCTGGAGCAGGATCCCAAGGCCCGCGTAGCGTGCGAAACCTACGTGAAAACCGGTATGGTGATGGTCG GTGGCGAAATCACTACCTCTGCCTGGGTCGATATCGAAGAACTGACCCGTAAAACCGTACGCGAAATCGGCTATGTGCAT TCAGACATGGGCTTTGATGCCGATTCCTGCGCGGTACTGAGTGCCATCGGTAAGCAGTCTCCTGATATCAACCAGGGTGT TGACCGTGCTGACCCACGTGAACAGGGTGCCGGTGACCAGGGCCTGATGTTCGGCTACGCCAGCAACGAAACCGACGTGC TGATGCCAGCGCCTATCACCTACGCCCACGCGCTGGTGAAGCGCCAGTCAGAAGTCCGTAAAGACGGCACCCTGTCCTGG TTGCGCCCAGACGCCAAGTCTCAGGTCACCTTCGCCTACGATGAAGGCAAGATTGTGGGTATTGACGCCATCGTACTGTC TACCCAGCACTGCGATTCTGTCTCTCAGTCTGATCTGGTAGAAGGCGTGATGGAAACCATCATCAAGCCTGTGGTACCTG CCCAGTGGCTGAACAAGGACACCAAGTTCTTTATCAACCCAACCGGTCGTTTCGTTATCGGTGGCCCAATGGGTGACTGT GGTCTGACTGGCCGCAAGATCATCGTTGACACCTACGGCGGTATGGCCCGTCACGGTGGTGGCGCCTTCTCCGGTAAAGA CCCATCCAAGGTTGACCGCTCTGCTGCCTACGCCGCCCGTTATGTTGCCAAAAACATCGTGGCCGCTGGCCTGGCTGACC GCTGTGAAATCCAGGTGTCCTACGCCATCGGTGTAGCCGAGCCAACCTCTATCAGCATCGAGACCTTCGGTACCGGTAAA CTGCCAGAAGATAAGCTCATTGCCTTGGTACGTCAGCACTTCGACCTGCGCCCATATGGCCTGACCGAAATGCTGAACCT GGCACGTCCTATCTATCAGGCCACTGCCGCTTACGGTCACTTTGGTCGTAACGAGTTCCCTTGGGAACAAACCAACAAGG CCGAAGCACTGCGCGCAGATTCAGGTCTGTAA
Upstream 100 bases:
>100_bases GATCCGGGGGATGATCGTGAACGTAATTTCAACTAAAATGGCCGTCTAGATGTAGATGCTTCTACACGTTTAACGCTTAA AAAGTCGAGATTTTCTAAAC
Downstream 100 bases:
>100_bases TCAGGCGCTTGCCCAATAAAAAACCGCCGAAAGGCGGTTTTTTTGTCTCTGGCTCACCTCAAGGTACCTCACACCGACAG GCCTTTGCCTGTAGCAATCG
Product: S-adenosylmethionine synthetase
Products: NA
Alternate protein names: AdoMet synthase; MAT; Methionine adenosyltransferase
Number of amino acids: Translated: 383; Mature: 382
Protein sequence:
>383_residues MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRKTVREIGYVH SDMGFDADSCAVLSAIGKQSPDINQGVDRADPREQGAGDQGLMFGYASNETDVLMPAPITYAHALVKRQSEVRKDGTLSW LRPDAKSQVTFAYDEGKIVGIDAIVLSTQHCDSVSQSDLVEGVMETIIKPVVPAQWLNKDTKFFINPTGRFVIGGPMGDC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGK LPEDKLIALVRQHFDLRPYGLTEMLNLARPIYQATAAYGHFGRNEFPWEQTNKAEALRADSGL
Sequences:
>Translated_383_residues MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRKTVREIGYVH SDMGFDADSCAVLSAIGKQSPDINQGVDRADPREQGAGDQGLMFGYASNETDVLMPAPITYAHALVKRQSEVRKDGTLSW LRPDAKSQVTFAYDEGKIVGIDAIVLSTQHCDSVSQSDLVEGVMETIIKPVVPAQWLNKDTKFFINPTGRFVIGGPMGDC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGK LPEDKLIALVRQHFDLRPYGLTEMLNLARPIYQATAAYGHFGRNEFPWEQTNKAEALRADSGL >Mature_382_residues AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTSAWVDIEELTRKTVREIGYVHS DMGFDADSCAVLSAIGKQSPDINQGVDRADPREQGAGDQGLMFGYASNETDVLMPAPITYAHALVKRQSEVRKDGTLSWL RPDAKSQVTFAYDEGKIVGIDAIVLSTQHCDSVSQSDLVEGVMETIIKPVVPAQWLNKDTKFFINPTGRFVIGGPMGDCG LTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTGKL PEDKLIALVRQHFDLRPYGLTEMLNLARPIYQATAAYGHFGRNEFPWEQTNKAEALRADSGL
Specific function: Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the e
COG id: COG0192
COG function: function code H; S-adenosylmethionine synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AdoMet synthase family
Homologues:
Organism=Homo sapiens, GI5174529, Length=375, Percent_Identity=57.8666666666667, Blast_Score=414, Evalue=1e-116, Organism=Homo sapiens, GI4557737, Length=375, Percent_Identity=58.1333333333333, Blast_Score=412, Evalue=1e-115, Organism=Escherichia coli, GI1789311, Length=383, Percent_Identity=85.1174934725849, Blast_Score=687, Evalue=0.0, Organism=Caenorhabditis elegans, GI17538498, Length=373, Percent_Identity=56.5683646112601, Blast_Score=410, Evalue=1e-115, Organism=Caenorhabditis elegans, GI17538494, Length=373, Percent_Identity=56.3002680965147, Blast_Score=408, Evalue=1e-114, Organism=Caenorhabditis elegans, GI25145633, Length=387, Percent_Identity=55.5555555555556, Blast_Score=408, Evalue=1e-114, Organism=Caenorhabditis elegans, GI17551082, Length=374, Percent_Identity=54.8128342245989, Blast_Score=400, Evalue=1e-112, Organism=Caenorhabditis elegans, GI32565905, Length=373, Percent_Identity=50.6702412868633, Blast_Score=346, Evalue=1e-95, Organism=Caenorhabditis elegans, GI32565911, Length=326, Percent_Identity=53.0674846625767, Blast_Score=335, Evalue=2e-92, Organism=Caenorhabditis elegans, GI25145635, Length=340, Percent_Identity=52.0588235294118, Blast_Score=333, Evalue=1e-91, Organism=Caenorhabditis elegans, GI32565903, Length=299, Percent_Identity=52.8428093645485, Blast_Score=302, Evalue=2e-82, Organism=Caenorhabditis elegans, GI32565909, Length=83, Percent_Identity=65.0602409638554, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI32565907, Length=46, Percent_Identity=73.9130434782609, Blast_Score=72, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6320710, Length=376, Percent_Identity=56.6489361702128, Blast_Score=416, Evalue=1e-117, Organism=Saccharomyces cerevisiae, GI6323209, Length=371, Percent_Identity=56.6037735849057, Blast_Score=410, Evalue=1e-115, Organism=Drosophila melanogaster, GI45552159, Length=380, Percent_Identity=54.7368421052632, Blast_Score=386, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580529, Length=380, Percent_Identity=54.7368421052632, Blast_Score=386, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580537, Length=380, Percent_Identity=54.7368421052632, Blast_Score=386, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580533, Length=380, Percent_Identity=54.7368421052632, Blast_Score=386, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580535, Length=380, Percent_Identity=54.7368421052632, Blast_Score=386, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580531, Length=380, Percent_Identity=54.7368421052632, Blast_Score=386, Evalue=1e-107, Organism=Drosophila melanogaster, GI24580527, Length=379, Percent_Identity=53.8258575197889, Blast_Score=380, Evalue=1e-105, Organism=Drosophila melanogaster, GI24580525, Length=379, Percent_Identity=53.8258575197889, Blast_Score=380, Evalue=1e-105, Organism=Drosophila melanogaster, GI24580541, Length=378, Percent_Identity=51.5873015873016, Blast_Score=357, Evalue=6e-99, Organism=Drosophila melanogaster, GI24580539, Length=120, Percent_Identity=56.6666666666667, Blast_Score=131, Evalue=8e-31,
Paralogues:
None
Copy number: 7,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): METK_SHEAM (A1S9A6)
Other databases:
- EMBL: CP000507 - RefSeq: YP_928632.1 - ProteinModelPortal: A1S9A6 - SMR: A1S9A6 - STRING: A1S9A6 - GeneID: 4605007 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_2760 - NMPDR: fig|326297.7.peg.2588 - eggNOG: COG0192 - HOGENOM: HBG443662 - OMA: IYYAHRL - PhylomeDB: A1S9A6 - ProtClustDB: PRK05250 - GO: GO:0005737 - HAMAP: MF_00086 - InterPro: IPR022631 - InterPro: IPR022630 - InterPro: IPR022629 - InterPro: IPR022628 - InterPro: IPR002133 - InterPro: IPR022636 - PANTHER: PTHR11964 - PIRSF: PIRSF000497 - TIGRFAMs: TIGR01034
Pfam domain/function: PF02773 S-AdoMet_synt_C; PF02772 S-AdoMet_synt_M; PF00438 S-AdoMet_synt_N; SSF55973 S-AdoMet_synt
EC number: =2.5.1.6
Molecular weight: Translated: 41438; Mature: 41307
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00376 ADOMET_SYNTHASE_1; PS00377 ADOMET_SYNTHASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEECCEECCH AWVDIEELTRKTVREIGYVHSDMGFDADSCAVLSAIGKQSPDINQGVDRADPREQGAGDQ HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCHHHCCCCC GLMFGYASNETDVLMPAPITYAHALVKRQSEVRKDGTLSWLRPDAKSQVTFAYDEGKIVG CEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCEEEE IDAIVLSTQHCDSVSQSDLVEGVMETIIKPVVPAQWLNKDTKFFINPTGRFVIGGPMGDC EEEEEEECHHCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCCCEEECCCCCCC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS CCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE YAIGVAEPTSISIETFGTGKLPEDKLIALVRQHFDLRPYGLTEMLNLARPIYQATAAYGH EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC FGRNEFPWEQTNKAEALRADSGL CCCCCCCCCCCCCHHHHHCCCCC >Mature Secondary Structure AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEITTS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEECCEECCH AWVDIEELTRKTVREIGYVHSDMGFDADSCAVLSAIGKQSPDINQGVDRADPREQGAGDQ HCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHCCCCCCCCHHHCCCCC GLMFGYASNETDVLMPAPITYAHALVKRQSEVRKDGTLSWLRPDAKSQVTFAYDEGKIVG CEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEECCCEEEE IDAIVLSTQHCDSVSQSDLVEGVMETIIKPVVPAQWLNKDTKFFINPTGRFVIGGPMGDC EEEEEEECHHCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCEEEECCCCCEEECCCCCCC GLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVS CCCCCEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE YAIGVAEPTSISIETFGTGKLPEDKLIALVRQHFDLRPYGLTEMLNLARPIYQATAAYGH EEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC FGRNEFPWEQTNKAEALRADSGL CCCCCCCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA