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The map label for this gene is araC [C]

Identifier: 119775847

GI number: 119775847

Start: 3247878

End: 3248696

Strand: Direct

Name: araC [C]

Synonym: Sama_2715

Alternate gene names: 119775847

Gene position: 3247878-3248696 (Clockwise)

Preceding gene: 119775844

Following gene: 119775849

Centisome position: 75.42

GC content: 57.88

Gene sequence:

>819_bases
ATGTCAACATTGCCGCATCTTGGTTTTCAGGTTTATCAGCCCTGCGCCCCGCTGCTGCCCTATGTTCGCTGCTACTGGCA
AATCACCCGCATTGCCGCCCCTGAGACAAGGTCGACCGAATTCATGCACCCCGAAGGAGGCACCGGCATCATCTTCAATT
TCGGTGCGCCAATGCACTTCGATGGCTGGCAACACAGGGCCCAGTGTCTGGTGACAGGCCCCACCAAACAAAGCACCAGG
CTGGAGCTTTCAGGCCGGGTCGATGCGCTCGGCATTCGTTTTTGGCCCGGCGCCGGACGGGCGTTTTTAAAGACGCCCCT
GTCGGAAATGCTCGGTCAAACCCTGACACCGGCCGACCTGTCGCTCGCACTCTTAAGCGATGAGCTGGCCGAACGTCTGG
CCGTGCTGCCCACCGCGCCTGAGCGCATTGCGCTGCTTGAAACCCGGCTGCTGCACTACCTCACCGCCCATGGCTCACAA
ACACAGACGACCGAACCCAGCATGAAATATGCGCTCAACTGGATAGCCGAGCAAAAAGGTCAGGGAGAAATACGTAACCT
GCTCACCGAGATAGACATCAGCCAACGCCAGCTTGAGCGTTTATTCCAGCAAAACCTGGGGATGTCGCCAAAAAACTACA
GCATATTGCAGCGCACCGGCTTCGCCCGGGAACTGCTTAAAAGCGACACCGACAGCCCTCTCACCGACATCGGCTATCAG
GCCGGATTCTACGACCAGGCCCATTTCATCCGTGAGTTCAAGCAAGTGATTGGCATCACCCCGGGGCAATTCCGAAGCAA
GGCGTTGCTTAGGCGCTGA

Upstream 100 bases:

>100_bases
GTCAGTAAGATGCACAGGGGATTGCCGGACTGTGATTGACTGGCATTAACCGGGGACGGTTGGGATATACTGGCTCAACC
CGCATTTGGAGCGCTTTGCC

Downstream 100 bases:

>100_bases
ACCCCAGCCCAACCCTTGGTTGTATATGTATGCCAAGGCCACCACTCGATGCCATTCATCACCTGCCGTGGGCTTTCGCA
CTGCCACACCCGTGACCCGC

Product: putative regulatory protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Transcription Regulator Protein; Helix-TurN-Helix Arac Domain; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcription Regulator; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSTLPHLGFQVYQPCAPLLPYVRCYWQITRIAAPETRSTEFMHPEGGTGIIFNFGAPMHFDGWQHRAQCLVTGPTKQSTR
LELSGRVDALGIRFWPGAGRAFLKTPLSEMLGQTLTPADLSLALLSDELAERLAVLPTAPERIALLETRLLHYLTAHGSQ
TQTTEPSMKYALNWIAEQKGQGEIRNLLTEIDISQRQLERLFQQNLGMSPKNYSILQRTGFARELLKSDTDSPLTDIGYQ
AGFYDQAHFIREFKQVIGITPGQFRSKALLRR

Sequences:

>Translated_272_residues
MSTLPHLGFQVYQPCAPLLPYVRCYWQITRIAAPETRSTEFMHPEGGTGIIFNFGAPMHFDGWQHRAQCLVTGPTKQSTR
LELSGRVDALGIRFWPGAGRAFLKTPLSEMLGQTLTPADLSLALLSDELAERLAVLPTAPERIALLETRLLHYLTAHGSQ
TQTTEPSMKYALNWIAEQKGQGEIRNLLTEIDISQRQLERLFQQNLGMSPKNYSILQRTGFARELLKSDTDSPLTDIGYQ
AGFYDQAHFIREFKQVIGITPGQFRSKALLRR
>Mature_271_residues
STLPHLGFQVYQPCAPLLPYVRCYWQITRIAAPETRSTEFMHPEGGTGIIFNFGAPMHFDGWQHRAQCLVTGPTKQSTRL
ELSGRVDALGIRFWPGAGRAFLKTPLSEMLGQTLTPADLSLALLSDELAERLAVLPTAPERIALLETRLLHYLTAHGSQT
QTTEPSMKYALNWIAEQKGQGEIRNLLTEIDISQRQLERLFQQNLGMSPKNYSILQRTGFARELLKSDTDSPLTDIGYQA
GFYDQAHFIREFKQVIGITPGQFRSKALLRR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30661; Mature: 30529

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLPHLGFQVYQPCAPLLPYVRCYWQITRIAAPETRSTEFMHPEGGTGIIFNFGAPMHF
CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEECCCCCCC
DGWQHRAQCLVTGPTKQSTRLELSGRVDALGIRFWPGAGRAFLKTPLSEMLGQTLTPADL
CCHHCCCEEEEECCCCCCCEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHH
SLALLSDELAERLAVLPTAPERIALLETRLLHYLTAHGSQTQTTEPSMKYALNWIAEQKG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
QGEIRNLLTEIDISQRQLERLFQQNLGMSPKNYSILQRTGFARELLKSDTDSPLTDIGYQ
CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCC
AGFYDQAHFIREFKQVIGITPGQFRSKALLRR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure 
STLPHLGFQVYQPCAPLLPYVRCYWQITRIAAPETRSTEFMHPEGGTGIIFNFGAPMHF
CCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEECCCCCCC
DGWQHRAQCLVTGPTKQSTRLELSGRVDALGIRFWPGAGRAFLKTPLSEMLGQTLTPADL
CCHHCCCEEEEECCCCCCCEEEECCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHH
SLALLSDELAERLAVLPTAPERIALLETRLLHYLTAHGSQTQTTEPSMKYALNWIAEQKG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
QGEIRNLLTEIDISQRQLERLFQQNLGMSPKNYSILQRTGFARELLKSDTDSPLTDIGYQ
CHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCC
AGFYDQAHFIREFKQVIGITPGQFRSKALLRR
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA