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The map label for this gene is yqhC [H]

Identifier: 119775844

GI number: 119775844

Start: 3243345

End: 3244244

Strand: Direct

Name: yqhC [H]

Synonym: Sama_2712

Alternate gene names: 119775844

Gene position: 3243345-3244244 (Clockwise)

Preceding gene: 119775841

Following gene: 119775847

Centisome position: 75.32

GC content: 54.22

Gene sequence:

>900_bases
ATGCTTAAAAAAGAACCTGTCGACAGTCTCTGTGTTGCACTGGCCAGCGCGGTGGCCCATCACACTGAAGGAGAGGAATG
GGCCTCCACGGCTATTGAAGGGCTGGAGTTTTATCGTCAACCCGCACCGACGTCCTGCGCTATATGCGTTGTGGAGCCGA
GCATCGCCTTGGTGGTACAGGGGGCGAAAAGCATGACATTAGGCGAACAGAGTTACCGATATGATACCCGCCGCTTTCTC
ATCACCTCTTTGGATTTACCGGCCAAAATGCAGGTTCTGGAAGCCAGTGAGGAACAACCTTATCTGGGCATTGTCCTCAA
GCTGGATTTGGCCATGATGAGCGAACTGATTCTGCAGGCACCACCGCATCCACATAAAGACCCCACCTCAGAATACGCCA
TGGTGCTTGGCAATACCACACCTTCACTGCTGGATGCCGTTCAACGTCTGGTGGCATTACTCGATGAACCCGAATCCATT
GCGGTACTCGCGCCCCTTATCAAACAGGAAATTTTTTGGCGGGTTCTTATCAGCGAACAGGGAAGTCGATTGCGGCAGAT
AGCATCGGTGGGCAGCCAGGGGCTGCGGATTGCCAAGTCCATCGAATGGCTGAAATCACATTATGATCAGCACCTGAGTG
TGGATGGGCTGGCCGACTTGGCCCGCATGAGCAAATCGACGTTCCATCATCACTTTCGTGCGCTCACCTCCATGAGTCCG
CTGCAGTATCAAAAACGCCTGAGACTGCTGGAAGCCCGCAGATTAATGCTCGGCGAAAACATGGATGCCTCTGCTGCGGC
CTACCGGGTCGGCTACGAGAGCCCATCACAGTTTTCGCGGGAATACGCACGCCTCTTTGGCAATCCGCCAAAACGTGACG
TCACAGCCCACTGGCAATAG

Upstream 100 bases:

>100_bases
CGTCCGAATCACAGGTTCAATCGGTGGTAACAAACTCGTATCTGCGTACAATCAACAGGAAGCAGATTGTGCAAAAATCT
TTCCCCCTGTGGAGCCAAAC

Downstream 100 bases:

>100_bases
CCCGCTCCAATACCTATATCCGCGGCTGACCACGGGCGTCCGGCAAGGCACCAAAGTAACTCCATCCAACGAACCTGCAG
CACCAAAGAAGGAAAGTCGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLKKEPVDSLCVALASAVAHHTEGEEWASTAIEGLEFYRQPAPTSCAICVVEPSIALVVQGAKSMTLGEQSYRYDTRRFL
ITSLDLPAKMQVLEASEEQPYLGIVLKLDLAMMSELILQAPPHPHKDPTSEYAMVLGNTTPSLLDAVQRLVALLDEPESI
AVLAPLIKQEIFWRVLISEQGSRLRQIASVGSQGLRIAKSIEWLKSHYDQHLSVDGLADLARMSKSTFHHHFRALTSMSP
LQYQKRLRLLEARRLMLGENMDASAAAYRVGYESPSQFSREYARLFGNPPKRDVTAHWQ

Sequences:

>Translated_299_residues
MLKKEPVDSLCVALASAVAHHTEGEEWASTAIEGLEFYRQPAPTSCAICVVEPSIALVVQGAKSMTLGEQSYRYDTRRFL
ITSLDLPAKMQVLEASEEQPYLGIVLKLDLAMMSELILQAPPHPHKDPTSEYAMVLGNTTPSLLDAVQRLVALLDEPESI
AVLAPLIKQEIFWRVLISEQGSRLRQIASVGSQGLRIAKSIEWLKSHYDQHLSVDGLADLARMSKSTFHHHFRALTSMSP
LQYQKRLRLLEARRLMLGENMDASAAAYRVGYESPSQFSREYARLFGNPPKRDVTAHWQ
>Mature_299_residues
MLKKEPVDSLCVALASAVAHHTEGEEWASTAIEGLEFYRQPAPTSCAICVVEPSIALVVQGAKSMTLGEQSYRYDTRRFL
ITSLDLPAKMQVLEASEEQPYLGIVLKLDLAMMSELILQAPPHPHKDPTSEYAMVLGNTTPSLLDAVQRLVALLDEPESI
AVLAPLIKQEIFWRVLISEQGSRLRQIASVGSQGLRIAKSIEWLKSHYDQHLSVDGLADLARMSKSTFHHHFRALTSMSP
LQYQKRLRLLEARRLMLGENMDASAAAYRVGYESPSQFSREYARLFGNPPKRDVTAHWQ

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=287, Percent_Identity=32.7526132404181, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1790339, Length=250, Percent_Identity=25.6, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33454; Mature: 33454

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKEPVDSLCVALASAVAHHTEGEEWASTAIEGLEFYRQPAPTSCAICVVEPSIALVVQ
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE
GAKSMTLGEQSYRYDTRRFLITSLDLPAKMQVLEASEEQPYLGIVLKLDLAMMSELILQA
CCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCC
PPHPHKDPTSEYAMVLGNTTPSLLDAVQRLVALLDEPESIAVLAPLIKQEIFWRVLISEQ
CCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GSRLRQIASVGSQGLRIAKSIEWLKSHYDQHLSVDGLADLARMSKSTFHHHFRALTSMSP
CHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
LQYQKRLRLLEARRLMLGENMDASAAAYRVGYESPSQFSREYARLFGNPPKRDVTAHWQ
HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLKKEPVDSLCVALASAVAHHTEGEEWASTAIEGLEFYRQPAPTSCAICVVEPSIALVVQ
CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEE
GAKSMTLGEQSYRYDTRRFLITSLDLPAKMQVLEASEEQPYLGIVLKLDLAMMSELILQA
CCCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCC
PPHPHKDPTSEYAMVLGNTTPSLLDAVQRLVALLDEPESIAVLAPLIKQEIFWRVLISEQ
CCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
GSRLRQIASVGSQGLRIAKSIEWLKSHYDQHLSVDGLADLARMSKSTFHHHFRALTSMSP
CHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
LQYQKRLRLLEARRLMLGENMDASAAAYRVGYESPSQFSREYARLFGNPPKRDVTAHWQ
HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]