Click here to switch to the map view.

The map label for this gene is ygiM [H]

Identifier: 119775807

GI number: 119775807

Start: 3201008

End: 3201610

Strand: Direct

Name: ygiM [H]

Synonym: Sama_2675

Alternate gene names: 119775807

Gene position: 3201008-3201610 (Clockwise)

Preceding gene: 119775806

Following gene: 119775808

Centisome position: 74.34

GC content: 54.73

Gene sequence:

>603_bases
GTGTTCAGACCCTTGTTTCTTGCCGGAGCCCTGCTCCTCTCCCCGGCCCTGTTGGCTGAAAATCTGCCGCGCTATATTTC
CGATGACATTTACATCTACCTGCATAATGGCCCGGGCAATGAGTTCCGCATTCTGGGCAGCATCAACGCAGGCACTCAGG
TGTCATTCACCGGTAAAACCTCCGGTGACTTTTCAGAAATTGTCGATCATCGTGGCCGCGAGGGCTGGGTCCGCACCGAC
GCGCTGAGCAGCGGCAAGAGCTTGAAACAAAAGCTGGAAGAAGCGGAAAAAGCACTGGAAGACAATCGCGCCGAACTCGC
TGCTGTGCGGGAAGAATTTAAAGACGCCGATGGCACTATCCGTGGCCTGCGTGAACAACTTGCCAAGGCCGATGAGCTGG
TGAGAACAGCCGTTGCCGACAAAGACAATGCCGTGACCGCAAGAGAGCAGGCAGAATCTGAAATGCAGTCGCTTAAAAAC
AATGAGCGTTTCCGTTTGTGGCAAGAGGGGGGCTTGATTGCCGCGCTGGGTATTCTGGTGGGTGTCATACTGGTGTATTT
ACCCCGACCACAAAGACGCAGAAGCGGCCGCTGGATGAATTGA

Upstream 100 bases:

>100_bases
ACAAGCCAAAAACAAGAGGGAAGTCGCGAGACTTCCCTCTTGCATTGGCGTCGCCAAATCCCTAGCATGGTGGCACACTT
TTGCTGATGGGATGTAATCT

Downstream 100 bases:

>100_bases
TATCCCCTGAGGCCCCGCTGATTTCAAACAGCGGGGCCTTGTCAAGTGGGCGTTACGCACGCCTGTCCCAATCTAAATCA
AACAATATTCACATTCCTTC

Product: SH3 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MFRPLFLAGALLLSPALLAENLPRYISDDIYIYLHNGPGNEFRILGSINAGTQVSFTGKTSGDFSEIVDHRGREGWVRTD
ALSSGKSLKQKLEEAEKALEDNRAELAAVREEFKDADGTIRGLREQLAKADELVRTAVADKDNAVTAREQAESEMQSLKN
NERFRLWQEGGLIAALGILVGVILVYLPRPQRRRSGRWMN

Sequences:

>Translated_200_residues
MFRPLFLAGALLLSPALLAENLPRYISDDIYIYLHNGPGNEFRILGSINAGTQVSFTGKTSGDFSEIVDHRGREGWVRTD
ALSSGKSLKQKLEEAEKALEDNRAELAAVREEFKDADGTIRGLREQLAKADELVRTAVADKDNAVTAREQAESEMQSLKN
NERFRLWQEGGLIAALGILVGVILVYLPRPQRRRSGRWMN
>Mature_200_residues
MFRPLFLAGALLLSPALLAENLPRYISDDIYIYLHNGPGNEFRILGSINAGTQVSFTGKTSGDFSEIVDHRGREGWVRTD
ALSSGKSLKQKLEEAEKALEDNRAELAAVREEFKDADGTIRGLREQLAKADELVRTAVADKDNAVTAREQAESEMQSLKN
NERFRLWQEGGLIAALGILVGVILVYLPRPQRRRSGRWMN

Specific function: Unknown

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1605 [H]

Homologues:

Organism=Escherichia coli, GI1789435, Length=191, Percent_Identity=25.130890052356, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003646
- InterPro:   IPR013247
- InterPro:   IPR016476 [H]

Pfam domain/function: PF08239 SH3_3 [H]

EC number: NA

Molecular weight: Translated: 22313; Mature: 22313

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRPLFLAGALLLSPALLAENLPRYISDDIYIYLHNGPGNEFRILGSINAGTQVSFTGKT
CCCHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCC
SGDFSEIVDHRGREGWVRTDALSSGKSLKQKLEEAEKALEDNRAELAAVREEFKDADGTI
CCCHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHH
RGLREQLAKADELVRTAVADKDNAVTAREQAESEMQSLKNNERFRLWQEGGLIAALGILV
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
GVILVYLPRPQRRRSGRWMN
HHHHHHCCCCHHHCCCCCCC
>Mature Secondary Structure
MFRPLFLAGALLLSPALLAENLPRYISDDIYIYLHNGPGNEFRILGSINAGTQVSFTGKT
CCCHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCEEEEEECCCCCEEEECCCC
SGDFSEIVDHRGREGWVRTDALSSGKSLKQKLEEAEKALEDNRAELAAVREEFKDADGTI
CCCHHHHHHCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHH
RGLREQLAKADELVRTAVADKDNAVTAREQAESEMQSLKNNERFRLWQEGGLIAALGILV
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
GVILVYLPRPQRRRSGRWMN
HHHHHHCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]