| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775787
Identifier: 119775787
GI number: 119775787
Start: 3179729
End: 3180625
Strand: Direct
Name: 119775787
Synonym: Sama_2655
Alternate gene names: NA
Gene position: 3179729-3180625 (Clockwise)
Preceding gene: 119775786
Following gene: 119775788
Centisome position: 73.84
GC content: 53.85
Gene sequence:
>897_bases ATGAACAAGAAACGTCTGGGTCTTTGCGCACTTAGCTTGTGTGCAGCAGCGCTGAGTCAACATAGCATCGCCGGTGAAGA TCTTTTCGGTTACCTCAAGGGCGCCGAAGCCCTGCCCGAAGGAGCCTCTGAGCTGTACCAAAAAGTCACAGTACGTGACG GAAAGAGCGTGGGGTCGTATCAGGGCATCGACTTCGAAACCGAGTACGAATACGGGGTTTCCAACAAGTTTTCTTCATCG GTATCGGCCAAATTCATGTCGCTGGATACCGATGGCCTTTCAGTTGACGGCTATCTGCCAGGTGCCAAGGATATAGGTTT CAAAGCCTCCGGCGCGGAACTGGGAATGGCTTACATGTTCCTCAGCCCCGCCAAAGACGATTTGGGTTTACAGGCCAGCC TGTCATTGGACTACGACTGGATTGACAAGCACTCGGGCTACGACAAAGACACACTGTCACTGGAGCTGGGCCTCCAGACT CAAAAGTACTTCATGGAAGGTGAGCTGGTTTGGCTTGGTAATATGGCGGTGGAAACCACCTACGCCGACCGTGCTCCCAT CGATAACCTGCCGGAAGATTTTGACTGGCCAACCGATCCGGAAATGGAGATTGAGCTGAAATTCGGCACCGGCCTGAGCT ATCGCTTCGCCCCCAACTGGTTTGTCAGCGCCGAAGTACTCTACGAGACCGAATTTGAAACCGAAGTAGGTCAGGAGCGC TGGTCATGGTTCGCCGGTCCTTCACTGCATTACGGCAGCGCCAACTGGTGGGCCACCCTGACATGGCTGCCGCAGCTTGC CGGTGGTGGTGAGCAGTTTGACGGCCAGGATACCGACCTGCATCTGATTGAAAAAACAGAGCAGGAATGGCGCTTTAAAA TTGCCTACAACTTCTGA
Upstream 100 bases:
>100_bases AATCCATGACAATAATTAATGCGAACTATTTTCATATGCATTACATTTCACTAAAATGCCCGCCAGATCGGATATCAATC ATTTCAAGATGGGAATTTAC
Downstream 100 bases:
>100_bases TTGCAGAATGGGGCGTCCGTTGGCGCCCCTTTTGGAGAATCACAATGTCTGACTCCCTGTTAACCAACAGCCTCTGGTTT ATCCCCATGGCTTTTGTTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSYQGIDFETEYEYGVSNKFSSS VSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMFLSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQT QKYFMEGELVWLGNMAVETTYADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF
Sequences:
>Translated_298_residues MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSYQGIDFETEYEYGVSNKFSSS VSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMFLSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQT QKYFMEGELVWLGNMAVETTYADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF >Mature_298_residues MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSYQGIDFETEYEYGVSNKFSSS VSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMFLSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQT QKYFMEGELVWLGNMAVETTYADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33293; Mature: 33293
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSY CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC QGIDFETEYEYGVSNKFSSSVSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMF CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCEECCCCHHCEEEEE LSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQTQKYFMEGELVWLGNMAVETT ECCCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEECCCHHEEEECCCEEEECCEEEEEE YADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEEEEEEECCHHHHHHHH WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF HHEECCCEEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC >Mature Secondary Structure MNKKRLGLCALSLCAAALSQHSIAGEDLFGYLKGAEALPEGASELYQKVTVRDGKSVGSY CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCC QGIDFETEYEYGVSNKFSSSVSAKFMSLDTDGLSVDGYLPGAKDIGFKASGAELGMAYMF CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCCCCEECCCCHHCEEEEE LSPAKDDLGLQASLSLDYDWIDKHSGYDKDTLSLELGLQTQKYFMEGELVWLGNMAVETT ECCCCCCCCCEEEEECCCHHHHCCCCCCCCEEEEEECCCHHEEEECCCEEEECCEEEEEE YADRAPIDNLPEDFDWPTDPEMEIELKFGTGLSYRFAPNWFVSAEVLYETEFETEVGQER CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCEEEEEEEEEEECCHHHHHHHH WSWFAGPSLHYGSANWWATLTWLPQLAGGGEQFDGQDTDLHLIEKTEQEWRFKIAYNF HHEECCCEEECCCCCEEEEEEEHHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA