| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775744
Identifier: 119775744
GI number: 119775744
Start: 3128324
End: 3128863
Strand: Direct
Name: 119775744
Synonym: Sama_2612
Alternate gene names: NA
Gene position: 3128324-3128863 (Clockwise)
Preceding gene: 119775743
Following gene: 119775745
Centisome position: 72.65
GC content: 56.48
Gene sequence:
>540_bases ATGACCAGTGCTGCCGACAAACGCCTCGACAAGCTGATTGCCGATGCCCCCAAAGAGCTGACGCCAGCAGAATCCAACTG GGATGCAATTGCCGCAAGGCTCGACCGCCCGCAGCCAACAAAGGCAGGGGAAGACAGAAAAGAGAATAGGCCGGGAAGAT TGCCCTGGTACGTAACAACTGCCGTTGCCGCGGCGCTGTTGCTAACTTTGGTACCGCAGCTCCCCATTCACAATACGCCC GAGGTGGATAACAGCCTGTGGCCGCTCATAGAAAGTATTGATCTCGCCCACCGTCAGGAAGTGGCCTCACTTGCTGAATC ATCCAGCAACGCCTGGCAACAGGTGGGATATCAAGAGCCCGTGGAAGCGGGCTTAAAAGAGCTGCGGGAAGCGGCACGGC TTATTCTGAGTTCCCTCAAGGCCAATCCACAGGATAAACAACTTTGGCAGCTCTGGCTCTGGGTCCAGCGCCGCGAAATT GAACTTTTAACCCAGGGACAAAGGCTGCCAGCCGGCGCCACACAAGGAGATACCCTATGA
Upstream 100 bases:
>100_bases GTTTTTCCCACGAGGAAGTGGCCAGTTTGCTCGGTATATCCACCGGCACCAGCAAGGCACATTACCACAGGGCGCGGGAA CTGATGAAGGAGATGCTGTC
Downstream 100 bases:
>100_bases AAACACTGTACTCACTGTCGCTGCTGTGCCTGCTCGCAAGCCCACTGTTTGCCGCCGAAAAAATCGATAAAAGCCTGGAT GTTGGTTCCCAGGTGGTACT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTTAVAAALLLTLVPQLPIHNTP EVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEPVEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREI ELLTQGQRLPAGATQGDTL
Sequences:
>Translated_179_residues MTSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTTAVAAALLLTLVPQLPIHNTP EVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEPVEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREI ELLTQGQRLPAGATQGDTL >Mature_178_residues TSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTTAVAAALLLTLVPQLPIHNTPE VDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEPVEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREIE LLTQGQRLPAGATQGDTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19968; Mature: 19837
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTT CCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHH AVAAALLLTLVPQLPIHNTPEVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEP HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH VEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREIELLTQGQRLPAGATQGDTL HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure TSAADKRLDKLIADAPKELTPAESNWDAIAARLDRPQPTKAGEDRKENRPGRLPWYVTT CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHH AVAAALLLTLVPQLPIHNTPEVDNSLWPLIESIDLAHRQEVASLAESSSNAWQQVGYQEP HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCH VEAGLKELREAARLILSSLKANPQDKQLWQLWLWVQRREIELLTQGQRLPAGATQGDTL HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA