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The map label for this gene is ycgG [C]

Identifier: 119775712

GI number: 119775712

Start: 3087745

End: 3088986

Strand: Direct

Name: ycgG [C]

Synonym: Sama_2580

Alternate gene names: 119775712

Gene position: 3087745-3088986 (Clockwise)

Preceding gene: 119775711

Following gene: 119775714

Centisome position: 71.71

GC content: 50.24

Gene sequence:

>1242_bases
ATGCTCGGGCAACAACAAATCCTGATAATCGACGATTCTGAAGCCATTTTAATGGTGGTAAAAACCATGCTTTCCCGCAT
GGGTTTTGAAAAAATCACCACCATGACTTCGGCGACAAAGGCACTGGCTGTCGTGGGTCTGGAGCCGGCGCGTTTTCAGA
TAATATTAACTGACCTTCGGATGCCTGATACCGACGGCCTGGATGTACTCAGGAGGCTTGGCGAAATGGGCTTCAAAGGC
GCAGTGGCCATCATTTCTGAAATGGACAGGCGCATCATCAACCTGGCAGCCGACATAGCCCGGCGTCATCGACTCCACAT
GATTGGCTGCATTTGCAAACCAGTACAACTGGACGATTTATCGGCGCTGGTTGAAAAAGCCACTGAGCTGCGTGTCACCC
TTGAACCTCCTGCACAGCTTCTGACCCATGAGCAAGTTCAGGCCGCATTCAATCAAATTCAGGTGATCCCCTACTATCAA
CCCAAGGTTGATTTAAACAGGTGTCAGGTTGTGGGCGTCGAAGCGCTGGCGCGCATTCGCTTACCGGGTGAAGTCAATGC
GCTTCGGCCCTGTCGCTTTATGCCAGTCATTCAAGAATATGGCATGCTGCCTCAGCTATCCCAACGCATGCTGCAGCAGG
CATGCAAAGACTTACCCACTATAAAATCCATCCTCGGCAACGACATCAAAGTCAGTTTGAACATCAGTCCGGAAGAGCTT
GAGAATACCTATCTGGCAGACAGTCTGGAGCATATCTGGCGTAAGAGTGGTGCCAGTAACGATTCGCTGGTGCTTGAAAT
CACCGAAGAGCATTACATACACAACAGTGCACAACTCGAATCCCTGAATCGGTTGCGCCTGAGAGGCTTTGGGTTGTCGT
TGGATGACTTTGGCACAGGATTTACCAACATCAATCAACTGAGAGATTTGCCCTACACAGAAGTCAAAATCGATCGTTCA
CTTATCATCAATATTCACAGAGACAGCTTTTGTCAGGCCATTTTGAATGGCCTTGTTGAAATTGCGCGCCAGCTGGGTAT
TACTTTGGTGGCCGAAGGCATAGAGCACATGGACGAACTCAAATACCTGATGCAGACTTACCCGGCACTGATATTGCAGG
GGTACCTCATCAGTCTGCCCCGTTCACTCGATACCCTGAATACCTGGCACAAGGGGTGGCAGCATCAATTTGGCAATCGA
TCCCATATCCACCGGCATCAGCCCCCCGCCAACGAAGACTGA

Upstream 100 bases:

>100_bases
TAAATCATTGTGCTTTGCGAAAACAACCAGTTTTTTTGTTTGCCTGAAACCACATAGGGACTAGGCTTATTTAAAGGTAA
GTCTCCAGGGGGCAAGGGAC

Downstream 100 bases:

>100_bases
AGTGCCGATAAAAGCTAAGGCGCCAAAGCCTCGCGAATAAACTCGTCGTTATCACACTCAGGGCAATCAGGCACGACCGA
CGGGAATTCGATGTCCATTC

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MLGQQQILIIDDSEAILMVVKTMLSRMGFEKITTMTSATKALAVVGLEPARFQIILTDLRMPDTDGLDVLRRLGEMGFKG
AVAIISEMDRRIINLAADIARRHRLHMIGCICKPVQLDDLSALVEKATELRVTLEPPAQLLTHEQVQAAFNQIQVIPYYQ
PKVDLNRCQVVGVEALARIRLPGEVNALRPCRFMPVIQEYGMLPQLSQRMLQQACKDLPTIKSILGNDIKVSLNISPEEL
ENTYLADSLEHIWRKSGASNDSLVLEITEEHYIHNSAQLESLNRLRLRGFGLSLDDFGTGFTNINQLRDLPYTEVKIDRS
LIINIHRDSFCQAILNGLVEIARQLGITLVAEGIEHMDELKYLMQTYPALILQGYLISLPRSLDTLNTWHKGWQHQFGNR
SHIHRHQPPANED

Sequences:

>Translated_413_residues
MLGQQQILIIDDSEAILMVVKTMLSRMGFEKITTMTSATKALAVVGLEPARFQIILTDLRMPDTDGLDVLRRLGEMGFKG
AVAIISEMDRRIINLAADIARRHRLHMIGCICKPVQLDDLSALVEKATELRVTLEPPAQLLTHEQVQAAFNQIQVIPYYQ
PKVDLNRCQVVGVEALARIRLPGEVNALRPCRFMPVIQEYGMLPQLSQRMLQQACKDLPTIKSILGNDIKVSLNISPEEL
ENTYLADSLEHIWRKSGASNDSLVLEITEEHYIHNSAQLESLNRLRLRGFGLSLDDFGTGFTNINQLRDLPYTEVKIDRS
LIINIHRDSFCQAILNGLVEIARQLGITLVAEGIEHMDELKYLMQTYPALILQGYLISLPRSLDTLNTWHKGWQHQFGNR
SHIHRHQPPANED
>Mature_413_residues
MLGQQQILIIDDSEAILMVVKTMLSRMGFEKITTMTSATKALAVVGLEPARFQIILTDLRMPDTDGLDVLRRLGEMGFKG
AVAIISEMDRRIINLAADIARRHRLHMIGCICKPVQLDDLSALVEKATELRVTLEPPAQLLTHEQVQAAFNQIQVIPYYQ
PKVDLNRCQVVGVEALARIRLPGEVNALRPCRFMPVIQEYGMLPQLSQRMLQQACKDLPTIKSILGNDIKVSLNISPEEL
ENTYLADSLEHIWRKSGASNDSLVLEITEEHYIHNSAQLESLNRLRLRGFGLSLDDFGTGFTNINQLRDLPYTEVKIDRS
LIINIHRDSFCQAILNGLVEIARQLGITLVAEGIEHMDELKYLMQTYPALILQGYLISLPRSLDTLNTWHKGWQHQFGNR
SHIHRHQPPANED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=32.2175732217573, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081921, Length=242, Percent_Identity=30.5785123966942, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=27.710843373494, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=27.5303643724696, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790496, Length=220, Percent_Identity=25.9090909090909, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1787541, Length=247, Percent_Identity=25.5060728744939, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787055, Length=321, Percent_Identity=24.9221183800623, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081980, Length=237, Percent_Identity=27.4261603375527, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=254, Percent_Identity=25.9842519685039, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=27.1255060728745, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788849, Length=212, Percent_Identity=26.8867924528302, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI226510982, Length=253, Percent_Identity=27.6679841897233, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 46734; Mature: 46734

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGQQQILIIDDSEAILMVVKTMLSRMGFEKITTMTSATKALAVVGLEPARFQIILTDLR
CCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCEEEEEEEECC
MPDTDGLDVLRRLGEMGFKGAVAIISEMDRRIINLAADIARRHRLHMIGCICKPVQLDDL
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
SALVEKATELRVTLEPPAQLLTHEQVQAAFNQIQVIPYYQPKVDLNRCQVVGVEALARIR
HHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHEEEHHHHHHCC
LPGEVNALRPCRFMPVIQEYGMLPQLSQRMLQQACKDLPTIKSILGNDIKVSLNISPEEL
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCHHHH
ENTYLADSLEHIWRKSGASNDSLVLEITEEHYIHNSAQLESLNRLRLRGFGLSLDDFGTG
HHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHHCCCC
FTNINQLRDLPYTEVKIDRSLIINIHRDSFCQAILNGLVEIARQLGITLVAEGIEHMDEL
CCCHHHHHCCCCHHEEECCEEEEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
KYLMQTYPALILQGYLISLPRSLDTLNTWHKGWQHQFGNRSHIHRHQPPANED
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLGQQQILIIDDSEAILMVVKTMLSRMGFEKITTMTSATKALAVVGLEPARFQIILTDLR
CCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCEEEEEEEECC
MPDTDGLDVLRRLGEMGFKGAVAIISEMDRRIINLAADIARRHRLHMIGCICKPVQLDDL
CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
SALVEKATELRVTLEPPAQLLTHEQVQAAFNQIQVIPYYQPKVDLNRCQVVGVEALARIR
HHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHEEEHHHHHHCC
LPGEVNALRPCRFMPVIQEYGMLPQLSQRMLQQACKDLPTIKSILGNDIKVSLNISPEEL
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCHHHH
ENTYLADSLEHIWRKSGASNDSLVLEITEEHYIHNSAQLESLNRLRLRGFGLSLDDFGTG
HHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHHCCCC
FTNINQLRDLPYTEVKIDRSLIINIHRDSFCQAILNGLVEIARQLGITLVAEGIEHMDEL
CCCHHHHHCCCCHHEEECCEEEEEECHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
KYLMQTYPALILQGYLISLPRSLDTLNTWHKGWQHQFGNRSHIHRHQPPANED
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]