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The map label for this gene is nqrD [H]

Identifier: 119775668

GI number: 119775668

Start: 3045032

End: 3045658

Strand: Reverse

Name: nqrD [H]

Synonym: Sama_2536

Alternate gene names: 119775668

Gene position: 3045658-3045032 (Counterclockwise)

Preceding gene: 119775669

Following gene: 119775667

Centisome position: 70.73

GC content: 51.99

Gene sequence:

>627_bases
ATGGCCAACGAACTGAAAAAGGTTCTGACCGGACCTATTATCAATAACAACCCGATTGCGCTGCAGATCCTCGGTGTTTG
TAGTGCGCTGGCAGTAACCAGCAAGCTGGAAACTGCACTGGTGATGACCCTGGCGCTGACCGCAGTGACTGCGTTCTCGA
ACCTGTTCATCTCCATGATCCGTAACCACATTCCAAGCAGTGTGCGTATTATCGTGCAAATGGCGATTATCGCCTCGCTG
GTAATCGTGGTTGATCAAATCCTGCAAGCTTACGCCTATGACGTGGCCAAGCAGCTGTCAGTATTCGTGGGCCTTATCAT
CACTAACTGTATCGTGATGGGCCGCGCCGAAGCCTACGCTATGAAGACTCCTCCAATGATGAGCTTTATGGATGGTATCG
GTAACGGTCTGGGCTATGGCGCCATCCTGCTGTCTGTTGGCTTCGTTCGTGAACTGTTTGGTAACGGTTCGCTGTTCGGC
GTAGAGATCCTGTCCAAGATCTCTGACGGTGGCTGGTATCAGCCCAACGGTCTGCTCCTGCTGCCGCCAAGTGCGTTCTT
CCTGATCGGTGTTCTGATTTGGATCATCCGCACCTACAAGCCTGAGCAAGTTGAAGCAAAAGGATAA

Upstream 100 bases:

>100_bases
CTCTGACCAGTAACGGTGTTCAGCACTCGCTGACGTTCTGGCTGGGTAAAGAAGGCTTTGCGAGTTTCATTGAAAAAGCA
CGCAACGGAGGGCTGAGCTA

Downstream 100 bases:

>100_bases
GGTCAATGGAACATTATATCAGTCTGTTAATCCGCTCTGTTTTCATTGAAAACATGGCCCTGTCCTTCTTCCTGGGCATG
TGTACCTTCCTGGCCGTGTC

Product: Na(+)-translocating NADH-quinone reductase subunit D

Products: NA

Alternate protein names: Na(+)-NQR subunit D; Na(+)-translocating NQR subunit D; NQR complex subunit D; NQR-1 subunit D [H]

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MANELKKVLTGPIINNNPIALQILGVCSALAVTSKLETALVMTLALTAVTAFSNLFISMIRNHIPSSVRIIVQMAIIASL
VIVVDQILQAYAYDVAKQLSVFVGLIITNCIVMGRAEAYAMKTPPMMSFMDGIGNGLGYGAILLSVGFVRELFGNGSLFG
VEILSKISDGGWYQPNGLLLLPPSAFFLIGVLIWIIRTYKPEQVEAKG

Sequences:

>Translated_208_residues
MANELKKVLTGPIINNNPIALQILGVCSALAVTSKLETALVMTLALTAVTAFSNLFISMIRNHIPSSVRIIVQMAIIASL
VIVVDQILQAYAYDVAKQLSVFVGLIITNCIVMGRAEAYAMKTPPMMSFMDGIGNGLGYGAILLSVGFVRELFGNGSLFG
VEILSKISDGGWYQPNGLLLLPPSAFFLIGVLIWIIRTYKPEQVEAKG
>Mature_207_residues
ANELKKVLTGPIINNNPIALQILGVCSALAVTSKLETALVMTLALTAVTAFSNLFISMIRNHIPSSVRIIVQMAIIASLV
IVVDQILQAYAYDVAKQLSVFVGLIITNCIVMGRAEAYAMKTPPMMSFMDGIGNGLGYGAILLSVGFVRELFGNGSLFGV
EILSKISDGGWYQPNGLLLLPPSAFFLIGVLIWIIRTYKPEQVEAKG

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1347

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=203, Percent_Identity=38.9162561576355, Blast_Score=119, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011292 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 22349; Mature: 22218

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANELKKVLTGPIINNNPIALQILGVCSALAVTSKLETALVMTLALTAVTAFSNLFISMI
CCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNHIPSSVRIIVQMAIIASLVIVVDQILQAYAYDVAKQLSVFVGLIITNCIVMGRAEAYA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
MKTPPMMSFMDGIGNGLGYGAILLSVGFVRELFGNGSLFGVEILSKISDGGWYQPNGLLL
ECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEE
LPPSAFFLIGVLIWIIRTYKPEQVEAKG
ECCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ANELKKVLTGPIINNNPIALQILGVCSALAVTSKLETALVMTLALTAVTAFSNLFISMI
CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNHIPSSVRIIVQMAIIASLVIVVDQILQAYAYDVAKQLSVFVGLIITNCIVMGRAEAYA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
MKTPPMMSFMDGIGNGLGYGAILLSVGFVRELFGNGSLFGVEILSKISDGGWYQPNGLLL
ECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEE
LPPSAFFLIGVLIWIIRTYKPEQVEAKG
ECCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA