Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775550

Identifier: 119775550

GI number: 119775550

Start: 2905885

End: 2907759

Strand: Reverse

Name: 119775550

Synonym: Sama_2416

Alternate gene names: NA

Gene position: 2907759-2905885 (Counterclockwise)

Preceding gene: 119775556

Following gene: 119775549

Centisome position: 67.53

GC content: 54.93

Gene sequence:

>1875_bases
ATGAATGTCTTGTTATACTCAAGCCCTTTTATTGGATTCCATCATACCTATAAGGACAACAGAGTGGAACAAAAGTTAAC
TGCCTTTTTACCCTTGTCACTGTTTATTTCGACTTGTGCATTTGCCGGTGTGGATTATCACATCGATCTTTCTTCTCCGA
CCCATCATCTGGCCAAAGTCGAAGTACGTTTTCCCAAGGTGGAGGCCGGAGACTTTCCGGTGAATTTACCCGTATGGCGA
ACCGGTAAATATCAGGTGTTGCCTCTGGCTGACGGCGTGCGCGCCTTTCAGGCCATAGATGCCAGTGGCAATGCTGTGCC
GTGGCGACGCAGCGCCAGCGGCGAGTGGGTGTTGAGTCTGCCCGTGGCGTCGGAAGTGACAGTGTCCTATCAGCTCTATG
CCGACGAGCTTGGGCTCAGAACCCGCCATATTGATGCCACCCATGCTTATCTGGATGCCAGCAGCGTGTTTATGTACAGT
CCAAAGTTTCGGGATCAGGAACTCAGTGTCAGTCTCACGGTTCCGGAAGGCTGGCAAAGCTATTCGGGGATGAGCAAGGG
GGACGGTGCCCACAGCTTTGTGGCGCCCAACTACGATGTGCTGGTGGACTCACCCATCGAAACCGGTGTAAGCCATCACC
GTCGTTTTTCATCCGCCAAGCGTGACTATGAGCTGGTTGTGTGGGGAGAGGGGAACTATGACCTGGATAAAATGGTCACC
GACTTGACCAAGCTTGGCACCCAGGCCAGCGCCATATGGGACGGTTTCCCCTTCGAGCGTTATGTTTATATGGTGCACGC
CACCAGTGGAGCCCGGGGGGCCACCGAGCATCTCAACTCCACCGTCATTCAGCTGCCGCGTTTTATGTTCCGTGAGCGCA
AGGACTATCTGAGATTTATCTCCACCGCCTCCCACGAGTTTATCCATACCTGGAACGTGAAAGCCTATCGCCCAGCCGGT
TTGGTGCCCTATGACTATCAACAGGAAGGACTGACCTCTTTGCTGTGGATAGCCGAAGGCTCCACCAGTTACTTTCAGCA
TCAGCTGCTGGCGCGGGCGGGCGTGATCACCGCCAAAGAGCTGCTGGAAGATATCGCCGGGCGTATTGACCGTCATCAGC
AAACCCCCGGCCGTGAAATCCAGTCGGTGGCCGAGGCCAGTCTCGGGGAGTGGGTTGCTCAGGGCGGCGATTATGCCCAT
AACCACAGCGTAAACATTTACTCTGAGGGGTATATGGCGTCGCTGGCCCTGGATATGGCGATTCTCTCTGATACCAAACT
CAAGCACTCCTATCGCGACGTCCACCGGGCCTTATACCGTGATTTTGCTGTGCCCAAGGGCTACCGCGTCGACGATGTTA
AAGGCATTCTGACCCAACTGACCGGCAAGGACTATGGCCCCTGGTGGCAGAGTCATATCGATTCCCCCATGGTGCTGGAT
TTTGATGAGCTGTTGTCCCGCGCCGGGTTGAGACTGGTTTATGGCAAAGACGACGGCGATGGCAAAACCAAAGTCTACCC
GGGCTTTAGCCTGGTATCAGGCAGTCTCAAGCTGCAAACTCTCGATAGGGGTGGCAAGGCATGGGAAGCAGGCCTGGTTG
CCGGTAACGAGCTGGTTGCCATCAATGGTCTCAAGGTCACGGGTGAGGGCTTTGATAAACGTCTGGCCGATTTCAAGGCA
GGCGACAGCATCACTGTGACCTACTTTGCTGACGACAGCCTCAAGCAGACCACATTGGTACTTGGCGAGCGGCCGGAGGG
TAAAGCGGCGCTCAAACCGCTGGAGAAGGTGTCTGACAAGCAAAAGGCCTTCTTCAAGGCCTGGCTGGGCATCGACTGGC
CGTTCGACAAAAAAGGCGAGTTCAGAAAGAGTTGA

Upstream 100 bases:

>100_bases
AAAAGCCAATAAAATGAGTCGCATAAATTATCCGTTGCTCAAGTCTGCCCCTGCAAAAATCAGGAAATTGTCAGCATTTG
TGACATCAGGATGAGGGGAG

Downstream 100 bases:

>100_bases
TGAAAGGCCGGCGCAAGCCGGCTTTTTTATTCCCAAGGCCATCGCCGGTGTTTGCAAAAACAGGACAGTGTTGCACAGGA
CACATTTGCTAAAACTTCTG

Product: peptidase M61

Products: NA

Alternate protein names: Peptidase M; Protease; Glycyl Aminopeptidase; M61 Family Peptidase; M61 Glycyl Aminopeptidase; Pdz/Dhr/Glgf; M61 Family Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; Glycyl Aminopeptidase Protein; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKVEVRFPKVEAGDFPVNLPVWR
TGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSLPVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYS
PKFRDQELSVSLTVPEGWQSYSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT
DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFISTASHEFIHTWNVKAYRPAG
LVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKELLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAH
NHSVNIYSEGYMASLALDMAILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD
FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVAINGLKVTGEGFDKRLADFKA
GDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDKQKAFFKAWLGIDWPFDKKGEFRKS

Sequences:

>Translated_624_residues
MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKVEVRFPKVEAGDFPVNLPVWR
TGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSLPVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYS
PKFRDQELSVSLTVPEGWQSYSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT
DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFISTASHEFIHTWNVKAYRPAG
LVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKELLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAH
NHSVNIYSEGYMASLALDMAILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD
FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVAINGLKVTGEGFDKRLADFKA
GDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDKQKAFFKAWLGIDWPFDKKGEFRKS
>Mature_624_residues
MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKVEVRFPKVEAGDFPVNLPVWR
TGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSLPVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYS
PKFRDQELSVSLTVPEGWQSYSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT
DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFISTASHEFIHTWNVKAYRPAG
LVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKELLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAH
NHSVNIYSEGYMASLALDMAILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD
FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVAINGLKVTGEGFDKRLADFKA
GDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDKQKAFFKAWLGIDWPFDKKGEFRKS

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69757; Mature: 69757

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKV
CEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEE
EVRFPKVEAGDFPVNLPVWRTGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSL
EEECCCEECCCCCCCCCEEECCCEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCEEEEE
PVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYSPKFRDQELSVSLTVPEGWQS
CCCCCEEEEEEEEEHHHCCEEEECCCHHHEECCCCEEEECCCCCCCEEEEEEECCCCHHH
YSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT
HCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH
DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFI
HHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
STASHEFIHTWNVKAYRPAGLVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKE
HHCCCCEEEEECCEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHH
LLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAHNHSVNIYSEGYMASLALDMA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
ILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEC
FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVA
HHHHHHHCCEEEEEECCCCCCCEEEECCHHEEECCEEEEEECCCCCEEECCEEECCEEEE
INGLKVTGEGFDKRLADFKAGDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDK
EECEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHH
QKAFFKAWLGIDWPFDKKGEFRKS
HHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNVLLYSSPFIGFHHTYKDNRVEQKLTAFLPLSLFISTCAFAGVDYHIDLSSPTHHLAKV
CEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEE
EVRFPKVEAGDFPVNLPVWRTGKYQVLPLADGVRAFQAIDASGNAVPWRRSASGEWVLSL
EEECCCEECCCCCCCCCEEECCCEEEEECCCCHHHHHEECCCCCCCCCCCCCCCCEEEEE
PVASEVTVSYQLYADELGLRTRHIDATHAYLDASSVFMYSPKFRDQELSVSLTVPEGWQS
CCCCCEEEEEEEEEHHHCCEEEECCCHHHEECCCCEEEECCCCCCCEEEEEEECCCCHHH
YSGMSKGDGAHSFVAPNYDVLVDSPIETGVSHHRRFSSAKRDYELVVWGEGNYDLDKMVT
HCCCCCCCCCCCEECCCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH
DLTKLGTQASAIWDGFPFERYVYMVHATSGARGATEHLNSTVIQLPRFMFRERKDYLRFI
HHHHHCCCHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
STASHEFIHTWNVKAYRPAGLVPYDYQQEGLTSLLWIAEGSTSYFQHQLLARAGVITAKE
HHCCCCEEEEECCEEECCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHH
LLEDIAGRIDRHQQTPGREIQSVAEASLGEWVAQGGDYAHNHSVNIYSEGYMASLALDMA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHH
ILSDTKLKHSYRDVHRALYRDFAVPKGYRVDDVKGILTQLTGKDYGPWWQSHIDSPMVLD
HHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEC
FDELLSRAGLRLVYGKDDGDGKTKVYPGFSLVSGSLKLQTLDRGGKAWEAGLVAGNELVA
HHHHHHHCCEEEEEECCCCCCCEEEECCHHEEECCEEEEEECCCCCEEECCEEECCEEEE
INGLKVTGEGFDKRLADFKAGDSITVTYFADDSLKQTTLVLGERPEGKAALKPLEKVSDK
EECEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHH
QKAFFKAWLGIDWPFDKKGEFRKS
HHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA