| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775548
Identifier: 119775548
GI number: 119775548
Start: 2901872
End: 2902309
Strand: Direct
Name: 119775548
Synonym: Sama_2414
Alternate gene names: NA
Gene position: 2901872-2902309 (Clockwise)
Preceding gene: 119775544
Following gene: 119775551
Centisome position: 67.39
GC content: 55.25
Gene sequence:
>438_bases TTGAGTTTTCGTTTGCAAACCCGCTGGCAGGCCAGCGACACCCCCGAGGGCGAGTTCAGCCGCGATCACCACATCACCTT TGGCAGCGGCCAGACCATCGAGGCTTCCTCTGCACCGGAATACAAGGGGAATCCCGCCATGGTGAACCCGGAGGAAAGCC TGCTGGCTGCGCTGTCGTCATGCCATATGCTCACCTTCCTGGCAATTGCGCACCTTAAACGACTGCCAGTGAAAAGCTAT GAGGACTGTGCATCGGCAGAACTTGGGAAACGCGACAGTGGCAAGCTGGCCGTGACCTATATGCAGCTCAATCCCACGGT GGAATTTATGGATGGGGTGGAGGTAAGCCGCGACACCCTGGAAAAGATGCACGAAAAAGCCCATGCCAACTGCTTTATCG CCAACAGTCTTGATTGTGAAGTGGAAATCCGCTTTTAA
Upstream 100 bases:
>100_bases TATCTTTAAGGCGATCCGTGGCGGGGCACAGTGCCTCAGGCTGCAACAGCATCACTTGCTTATTGCCGCGCCACACGCCC AGTCGAATAAGGAGATTATC
Downstream 100 bases:
>100_bases GCAGCCATAAAAAACGGGCCGTACCGACTGGGAACTACGTTGCCGGTACAGCCCTGAACCTGAGGGCGACAACTGTCGCC CTATTTTTTCCTTTAATTGG
Product: OsmC family protein
Products: NA
Alternate protein names: OsmC-Like Protein; Redox Protein; OsmC/Ohr Family Protein; Osmc Family Protein; Redox Protein Regulator Of Disulfide Bond Formation; Regulator Of Disulfide Bond Formation; OsmC-Family Protein Like; Stress-Induced Protein OsmC-Like Protein; OsmC-Like Family; Osmotically Inducible Protein
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MSFRLQTRWQASDTPEGEFSRDHHITFGSGQTIEASSAPEYKGNPAMVNPEESLLAALSSCHMLTFLAIAHLKRLPVKSY EDCASAELGKRDSGKLAVTYMQLNPTVEFMDGVEVSRDTLEKMHEKAHANCFIANSLDCEVEIRF
Sequences:
>Translated_145_residues MSFRLQTRWQASDTPEGEFSRDHHITFGSGQTIEASSAPEYKGNPAMVNPEESLLAALSSCHMLTFLAIAHLKRLPVKSY EDCASAELGKRDSGKLAVTYMQLNPTVEFMDGVEVSRDTLEKMHEKAHANCFIANSLDCEVEIRF >Mature_144_residues SFRLQTRWQASDTPEGEFSRDHHITFGSGQTIEASSAPEYKGNPAMVNPEESLLAALSSCHMLTFLAIAHLKRLPVKSYE DCASAELGKRDSGKLAVTYMQLNPTVEFMDGVEVSRDTLEKMHEKAHANCFIANSLDCEVEIRF
Specific function: Unknown
COG id: COG1764
COG function: function code O; Predicted redox protein, regulator of disulfide bond formation
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16169; Mature: 16038
Theoretical pI: Translated: 5.23; Mature: 5.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFRLQTRWQASDTPEGEFSRDHHITFGSGQTIEASSAPEYKGNPAMVNPEESLLAALSS CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH CHMLTFLAIAHLKRLPVKSYEDCASAELGKRDSGKLAVTYMQLNPTVEFMDGVEVSRDTL HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCEEECCCCCCCHHHH EKMHEKAHANCFIANSLDCEVEIRF HHHHHHHCCCEEEECCCCEEEEEEC >Mature Secondary Structure SFRLQTRWQASDTPEGEFSRDHHITFGSGQTIEASSAPEYKGNPAMVNPEESLLAALSS CCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCCCCCCCEECCHHHHHHHHHH CHMLTFLAIAHLKRLPVKSYEDCASAELGKRDSGKLAVTYMQLNPTVEFMDGVEVSRDTL HHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCEEECCCCCCCHHHH EKMHEKAHANCFIANSLDCEVEIRF HHHHHHHCCCEEEECCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA