| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775529
Identifier: 119775529
GI number: 119775529
Start: 2878443
End: 2879168
Strand: Reverse
Name: 119775529
Synonym: Sama_2395
Alternate gene names: NA
Gene position: 2879168-2878443 (Counterclockwise)
Preceding gene: 119775532
Following gene: 119775527
Centisome position: 66.86
GC content: 49.72
Gene sequence:
>726_bases GTGAAGACCGCTGGAATCCGTGTGCGCCTCATTTCGTCTGTGTTCTTGCTTGGGCTGGCGTTTGCGTCCCAATCTGACGT TGCACCAGGTGGTACAGCAAGAACACTGGCGGTTATCGCCTTGGAATATCCACCGTTCACGACGGAAACACAGGCAGATA AAGGCAGCAGTTTCAGAATGTTGCAAAAGTATTTGCTCTCAAACCAACTTGAATTTGAGCTCCAACCCCTGTTCCTGCCC TCAGCGCGTGCACAGAGCGAAATTATTGCGGGTAACTGGTGTGCATCATTTTATCCCCCTCCGGATATTGTTAAGGAACA GTCCCGCTTTTTACTGTTGTCCGATGAAATTGTTTCTATTGGCATTTATCGCCGACGTCAGCCCGAGCCTTTTGTCTGGA CGGACTTATCTGAGTTGGGAGGGGGAAAAATTGCCTTACTTCGCTCAAGAGTTGATGGAGGCTTTTTACAACAATTCACT GATGCGGGTCTCACTATTGAGTTTGTCAGCGATGTTGCGACCGGATTAAGGATGCTCAATAAAGGGCGTGTTGACTATGC GTTTGGAGACAGTGACGCAATAAGTGTACTCACCTTACCAAAAGCGATGCGGGAAAATCTGCAGTTTTCTTCCACCCACC TGATGGAAGTGCCTGTCGGGGTGTTCGTCAACCCAATGTGTCCAGAGGCCGTTGCCGTTCTGGAGACAGTGCCAGCCTCT GACTGA
Upstream 100 bases:
>100_bases AAGCAGGAGCGATTTGCCGTTGCTTGACGGCGGTTGAGTCGCGACATGGGAAAGACGGCACTAGACTCATAGAGGCTTGG CTATCAAAGGAGCGATTCTT
Downstream 100 bases:
>100_bases AGGGGACAGGACAGCGCTGATTAGTGAGTCGCCTTATCTGACGACATCTCTGTGCTGTGCTCCAGCCCCAGTGACTGGTA ATAACCCTGAGGATGACATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MKTAGIRVRLISSVFLLGLAFASQSDVAPGGTARTLAVIALEYPPFTTETQADKGSSFRMLQKYLLSNQLEFELQPLFLP SARAQSEIIAGNWCASFYPPPDIVKEQSRFLLLSDEIVSIGIYRRRQPEPFVWTDLSELGGGKIALLRSRVDGGFLQQFT DAGLTIEFVSDVATGLRMLNKGRVDYAFGDSDAISVLTLPKAMRENLQFSSTHLMEVPVGVFVNPMCPEAVAVLETVPAS D
Sequences:
>Translated_241_residues MKTAGIRVRLISSVFLLGLAFASQSDVAPGGTARTLAVIALEYPPFTTETQADKGSSFRMLQKYLLSNQLEFELQPLFLP SARAQSEIIAGNWCASFYPPPDIVKEQSRFLLLSDEIVSIGIYRRRQPEPFVWTDLSELGGGKIALLRSRVDGGFLQQFT DAGLTIEFVSDVATGLRMLNKGRVDYAFGDSDAISVLTLPKAMRENLQFSSTHLMEVPVGVFVNPMCPEAVAVLETVPAS D >Mature_241_residues MKTAGIRVRLISSVFLLGLAFASQSDVAPGGTARTLAVIALEYPPFTTETQADKGSSFRMLQKYLLSNQLEFELQPLFLP SARAQSEIIAGNWCASFYPPPDIVKEQSRFLLLSDEIVSIGIYRRRQPEPFVWTDLSELGGGKIALLRSRVDGGFLQQFT DAGLTIEFVSDVATGLRMLNKGRVDYAFGDSDAISVLTLPKAMRENLQFSSTHLMEVPVGVFVNPMCPEAVAVLETVPAS D
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26383; Mature: 26383
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTAGIRVRLISSVFLLGLAFASQSDVAPGGTARTLAVIALEYPPFTTETQADKGSSFRM CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHH LQKYLLSNQLEFELQPLFLPSARAQSEIIAGNWCASFYPPPDIVKEQSRFLLLSDEIVSI HHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEECCEEEE GIYRRRQPEPFVWTDLSELGGGKIALLRSRVDGGFLQQFTDAGLTIEFVSDVATGLRMLN EHEECCCCCCEEEECHHHCCCCEEEEEEECCCCHHHHHHHCCCCEEEHHHHHHHHHHHHH KGRVDYAFGDSDAISVLTLPKAMRENLQFSSTHLMEVPVGVFVNPMCPEAVAVLETVPAS CCCEEEEECCCCCEEEEECCHHHHHCCCCCCCEEEEECCCEEECCCCHHHHHHHHHCCCC D C >Mature Secondary Structure MKTAGIRVRLISSVFLLGLAFASQSDVAPGGTARTLAVIALEYPPFTTETQADKGSSFRM CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHH LQKYLLSNQLEFELQPLFLPSARAQSEIIAGNWCASFYPPPDIVKEQSRFLLLSDEIVSI HHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCHHHHHCCCCEEEEECCEEEE GIYRRRQPEPFVWTDLSELGGGKIALLRSRVDGGFLQQFTDAGLTIEFVSDVATGLRMLN EHEECCCCCCEEEECHHHCCCCEEEEEEECCCCHHHHHHHCCCCEEEHHHHHHHHHHHHH KGRVDYAFGDSDAISVLTLPKAMRENLQFSSTHLMEVPVGVFVNPMCPEAVAVLETVPAS CCCEEEEECCCCCEEEEECCHHHHHCCCCCCCEEEEECCCEEECCCCHHHHHHHHHCCCC D C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA