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The map label for this gene is cydB [H]

Identifier: 119775483

GI number: 119775483

Start: 2816153

End: 2817292

Strand: Reverse

Name: cydB [H]

Synonym: Sama_2348

Alternate gene names: 119775483

Gene position: 2817292-2816153 (Counterclockwise)

Preceding gene: 119775484

Following gene: 119775482

Centisome position: 65.42

GC content: 55.96

Gene sequence:

>1140_bases
ATGTTTGATTACGAAGTATTGCGTTTTATCTGGTGGGCCCTGGTCGGCGTGCTCTTTATCGGCTTCGCTGTCACCGACGG
TTTCGACATGGGTGTGGGTGCCTTGCTGCCAGTTATCGGCAAGGATGACACCGACAGAAGAGTCATGATCAACACCGTTG
CCCCCCACTGGGACGGTAACCAGGTATGGCTTATCACCGCCGGTGGCGCGCTCTTTGCCGCCTGGCCCATGGTCTATGCC
GTGTCTTTCTCGGGCTTCTATGTGGCCATGGTGATTGTGCTGCTGGCGCTGTTTTTGCGTCCGGTGGGCTTTGACTATCG
CTCCAAGATTGAAGCACCAAAATGGCGTAAGTCCTGGGACTGGGCGCTGTTTGTGGGCTCCTTCGTGCCGCCGCTGATTA
TCGGTGTTGCCTTTGGTAACCTGCTGCAGGGCGTACCCTTCAATTTTGATGAGTTCCTGCGTGCCAAATACCACGGTGGC
CTGTTTGGTCTGCTTAACCCCTTCGGTCTGTTGGCCGGCTTGGTTAGCGTGAGCATGTTTATGATGCAGGGCGCAACCTG
GCTGCAGATGAAGACTGAAGGCGAGCTGCGGGTGCGTGCCACCAATGCCGCTCAGCTGCTGGCACTTCTGCTGGTCGTAC
TGTTTGCCGCGGCTGGTTTCTGGGTCGCCAATGGCATCGATGGTTATGTGATTACCTCGGCTATCGACACCCACGCTGCC
TCTAATCCAGTGGGTAAAACCGTTGAGTTGGTAAGTGGTGCCTGGATGGCGAACTATCAGACGTACCCCATCACCATGGC
TTTCCCTGTACTGGGTCTGGCGATGCCGGTGCTGGTGATTCTTGCAAGCCGTTTTAACCGCAGTGGTTTTGCCTTCCTGT
TCAGCTCGCTGGCGGTTGCCGGTGTGATCCTGACCTGCGGCGCGGCCATGTTCCCGTTCGTGATGCCATCTTCACTGGAG
CCGGGCGTGAGCCTGACCATGTGGGATGCCACCGCCAGTGAAATGACCCTGACCGTGATGACCTGGGCTGCCATTATCTT
TGTTCCGATTGTGCTCTCGTACACCATCTGGACTTACTACAAGATGTATGGTCGTCTGAGCCGTCAGTTCATCGACAACA
ACAAGCATTCACTGTACTGA

Upstream 100 bases:

>100_bases
GCTCTTCCTGATGTTCAAGTATGCCCGTCTTGGCCCAAGCAGCCTCAAGACCGGCCGCTACCATTTCGAGAAGCTGGAAG
CCTAAGGGAAGGATAAGACT

Downstream 100 bases:

>100_bases
TAAGGAGTCGCTATGTGGTATTTCACCTGGATTCTGGGCGTACTCTTGGCCTGTTCCTTCGGGATTATCAACGCCCTGTG
GCTTGAAAACACCGAAAACA

Product: cytochrome bd-I oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MFDYEVLRFIWWALVGVLFIGFAVTDGFDMGVGALLPVIGKDDTDRRVMINTVAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMVIVLLALFLRPVGFDYRSKIEAPKWRKSWDWALFVGSFVPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGG
LFGLLNPFGLLAGLVSVSMFMMQGATWLQMKTEGELRVRATNAAQLLALLLVVLFAAAGFWVANGIDGYVITSAIDTHAA
SNPVGKTVELVSGAWMANYQTYPITMAFPVLGLAMPVLVILASRFNRSGFAFLFSSLAVAGVILTCGAAMFPFVMPSSLE
PGVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTIWTYYKMYGRLSRQFIDNNKHSLY

Sequences:

>Translated_379_residues
MFDYEVLRFIWWALVGVLFIGFAVTDGFDMGVGALLPVIGKDDTDRRVMINTVAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMVIVLLALFLRPVGFDYRSKIEAPKWRKSWDWALFVGSFVPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGG
LFGLLNPFGLLAGLVSVSMFMMQGATWLQMKTEGELRVRATNAAQLLALLLVVLFAAAGFWVANGIDGYVITSAIDTHAA
SNPVGKTVELVSGAWMANYQTYPITMAFPVLGLAMPVLVILASRFNRSGFAFLFSSLAVAGVILTCGAAMFPFVMPSSLE
PGVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTIWTYYKMYGRLSRQFIDNNKHSLY
>Mature_379_residues
MFDYEVLRFIWWALVGVLFIGFAVTDGFDMGVGALLPVIGKDDTDRRVMINTVAPHWDGNQVWLITAGGALFAAWPMVYA
VSFSGFYVAMVIVLLALFLRPVGFDYRSKIEAPKWRKSWDWALFVGSFVPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGG
LFGLLNPFGLLAGLVSVSMFMMQGATWLQMKTEGELRVRATNAAQLLALLLVVLFAAAGFWVANGIDGYVITSAIDTHAA
SNPVGKTVELVSGAWMANYQTYPITMAFPVLGLAMPVLVILASRFNRSGFAFLFSSLAVAGVILTCGAAMFPFVMPSSLE
PGVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTIWTYYKMYGRLSRQFIDNNKHSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=65.1715039577836, Blast_Score=522, Evalue=1e-149,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=52.7704485488127, Blast_Score=420, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41748; Mature: 41748

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYEVLRFIWWALVGVLFIGFAVTDGFDMGVGALLPVIGKDDTDRRVMINTVAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPMVYAVSFSGFYVAMVIVLLALFLRPVGFDYRSKIEAPKWRKSWD
EEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC
WALFVGSFVPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGGLFGLLNPFGLLAGLVSVSMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGATWLQMKTEGELRVRATNAAQLLALLLVVLFAAAGFWVANGIDGYVITSAIDTHAA
HHCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCC
SNPVGKTVELVSGAWMANYQTYPITMAFPVLGLAMPVLVILASRFNRSGFAFLFSSLAVA
CCCCCCHHHHHHCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GVILTCGAAMFPFVMPSSLEPGVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTIWTYY
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMYGRLSRQFIDNNKHSLY
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFDYEVLRFIWWALVGVLFIGFAVTDGFDMGVGALLPVIGKDDTDRRVMINTVAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCC
QVWLITAGGALFAAWPMVYAVSFSGFYVAMVIVLLALFLRPVGFDYRSKIEAPKWRKSWD
EEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCC
WALFVGSFVPPLIIGVAFGNLLQGVPFNFDEFLRAKYHGGLFGLLNPFGLLAGLVSVSMF
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
MMQGATWLQMKTEGELRVRATNAAQLLALLLVVLFAAAGFWVANGIDGYVITSAIDTHAA
HHCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCC
SNPVGKTVELVSGAWMANYQTYPITMAFPVLGLAMPVLVILASRFNRSGFAFLFSSLAVA
CCCCCCHHHHHHCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GVILTCGAAMFPFVMPSSLEPGVSLTMWDATASEMTLTVMTWAAIIFVPIVLSYTIWTYY
HHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMYGRLSRQFIDNNKHSLY
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]