| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is fliF [H]
Identifier: 119775432
GI number: 119775432
Start: 2762018
End: 2763715
Strand: Reverse
Name: fliF [H]
Synonym: Sama_2297
Alternate gene names: 119775432
Gene position: 2763715-2762018 (Counterclockwise)
Preceding gene: 119775433
Following gene: 119775431
Centisome position: 64.18
GC content: 55.18
Gene sequence:
>1698_bases GTGAGCACAGATATGATTGTCAGCACCGACAGCGGCATGAGCGGTGTACAACAGGAAAATAAATCCGGGGTGCTGGGTAA CCTCGGCAGCGCCGATATGCTCAGACAGGTCACCATGATCCTGGCCCTTGCCATCTGTCTGGCATTGGCGGTGTTTGTGA TGATGTGGGCACAGGAGCCTGAATACCGTCCATTGGGTAAGTTTGAAGCCCAGGAAATGATCCAGGTGCTGGATGTGCTC GATAAAAACAAAATTCCCTATCAGGTGGATTTTGATGTGCTGCGAGTCCCGGAAGATAAGTATCAAGACATCCGGCTGCT TTTGAGCCGTAACGGTGTGGATGCTGCCAGTACCACCAATCAGGATTTTCTGAGTCAGGACATGGGCTTTGGCGTAAGCC AGCGTCTGGAGCAGGCCCGACTCAAGCACAGCCAGGAGCAAAACCTCGCCCGCACCATCGAAGAGCTGAAAAGCGTCAGC CGTGCCAAGGTGATCCTGGCGCTGCCCAAAGAAAACGTGTTTGCCCGTAACCAATCCAAGGCCAGTGCCACTGTGGTCGT CACCAGTCGTCGTGGCGGTCTGGGGCAGGAAGAAGTGGATGCCATAGTCGATATAGTGGCGTCCGCCGTACAGGGACTCG AGCCTACCCGGGTGACGGTAACCGATTCCAACGGTCGTTTGCTGAACTCCGGCAGCCAGGACGGCGCTTCTGCCCGTGCC CGCCGTGAACTCGAGCTCGTCAAACAAAAAGAAGCCGAATACCGTGCCAAGGTTGATGCCATACTGATGCCCATTTTGGG CCCGGAAAATTACACCTCCCAGGTGGATGTGACCATGGACTTTACTGCCGTGGAACAAACGTCCAAGCGTTTCAACCCGG ATCTGCCTGCGGTGCGCAGCGAAATGACCCTGGAAACCCAAACCAGCGGTGAAGCCAACATGGGGATCCCCGGTGCGCTC TCGAATCAGCCGCCGATGGAGTCAAACATTCCTCAAACCCTGCAGGAAGCGCAGGATAAGGCCCAGGCCAACGGAAATTC ACACCGTGAAGCGACCCGTAACTACGAGCTGGACACCACCATCAGCCATACCCGTCAACAGATTGGCGTGGTGCGCCGGG TAAGTGTATCTGTGGCGGTGGACTATAAAACCGGTGAAGCCAATACCGAAGGTCAGGTGAATCGTGTAGCCCGCACCGAG GCCGAGCTTGCCAATATTCGCCGTCTGCTTGAGGGCGCTGTGGGGTTCAGCGGTCAACGCGGTGACAGCATAGAAGTCGT CACTGTTCCCTTTATGGATCAGCTTGTTGAGGAAGTGCCAGAGTTGCCTATGTGGGAGCAACCCTGGTTCTGGAAGGCCA TGAAACTGGCATCCGGCTCTCTGGCCATCCTGGTGCTCATTCTCTTTGTCGTGCGGCCACTGCTGAAGAAACTGCTGCTC ACCGACAAGGTCGATATGCCTGACGATGGCCGCCTGGGTCATGAACTGGCTGAGATTGAAGATCAGTTCGCCGCAGACAC TTTGGGCATGCTCAATGCCAGCGATGCTGAGTACAGCTATGCGGATGATGGTTCGATTCTCATCCCGAATCTGCACAAAG ATGATGATATGATTAAGGCTATCCGCGCTCTGGTTGCCAACGAACCTGAGCTTTCCACTCAAGTCGTGAAAAATTGGTTG CAACAGGACAATGGCTGA
Upstream 100 bases:
>100_bases TGCCTTTGAGGCCACTGTGCAGGTGCGCAACAAGCTTGTCGAAGCCTACAAAGAAATCATGAGCATGCCCGTTTAAAGCG GCCACTGAAGGATACTGAAC
Downstream 100 bases:
>100_bases AAATAAAGAAAAATCCGAATCCGGTTTCAAAGTCAGCAATTTAAGCGGCGTTGAAAAAACGGCCATCCTGCTGCTGAGTC TGAGTGAGGCCGACGCGGCC
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 564
Protein sequence:
>565_residues MSTDMIVSTDSGMSGVQQENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEPEYRPLGKFEAQEMIQVLDVL DKNKIPYQVDFDVLRVPEDKYQDIRLLLSRNGVDAASTTNQDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVS RAKVILALPKENVFARNQSKASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARA RRELELVKQKEAEYRAKVDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRSEMTLETQTSGEANMGIPGAL SNQPPMESNIPQTLQEAQDKAQANGNSHREATRNYELDTTISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRVARTE AELANIRRLLEGAVGFSGQRGDSIEVVTVPFMDQLVEEVPELPMWEQPWFWKAMKLASGSLAILVLILFVVRPLLKKLLL TDKVDMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWL QQDNG
Sequences:
>Translated_565_residues MSTDMIVSTDSGMSGVQQENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEPEYRPLGKFEAQEMIQVLDVL DKNKIPYQVDFDVLRVPEDKYQDIRLLLSRNGVDAASTTNQDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVS RAKVILALPKENVFARNQSKASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARA RRELELVKQKEAEYRAKVDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRSEMTLETQTSGEANMGIPGAL SNQPPMESNIPQTLQEAQDKAQANGNSHREATRNYELDTTISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRVARTE AELANIRRLLEGAVGFSGQRGDSIEVVTVPFMDQLVEEVPELPMWEQPWFWKAMKLASGSLAILVLILFVVRPLLKKLLL TDKVDMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWL QQDNG >Mature_564_residues STDMIVSTDSGMSGVQQENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEPEYRPLGKFEAQEMIQVLDVLD KNKIPYQVDFDVLRVPEDKYQDIRLLLSRNGVDAASTTNQDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVSR AKVILALPKENVFARNQSKASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARAR RELELVKQKEAEYRAKVDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRSEMTLETQTSGEANMGIPGALS NQPPMESNIPQTLQEAQDKAQANGNSHREATRNYELDTTISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRVARTEA ELANIRRLLEGAVGFSGQRGDSIEVVTVPFMDQLVEEVPELPMWEQPWFWKAMKLASGSLAILVLILFVVRPLLKKLLLT DKVDMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKAIRALVANEPELSTQVVKNWLQ QDNG
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=445, Percent_Identity=35.2808988764045, Blast_Score=218, Evalue=6e-58,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 62285; Mature: 62154
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTDMIVSTDSGMSGVQQENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEP CCCCEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EYRPLGKFEAQEMIQVLDVLDKNKIPYQVDFDVLRVPEDKYQDIRLLLSRNGVDAASTTN CCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCEEECCCHHHHHHHHHHHCCCCCCCCCCC QDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVSRAKVILALPKENVFARNQSK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCC ASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARA CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCHHHHH RRELELVKQKEAEYRAKVDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRS HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCHHHH EMTLETQTSGEANMGIPGALSNQPPMESNIPQTLQEAQDKAQANGNSHREATRNYELDTT CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHH ISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRVARTEAELANIRRLLEGAVGFSGQR HHHHHHHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GDSIEVVTVPFMDQLVEEVPELPMWEQPWFWKAMKLASGSLAILVLILFVVRPLLKKLLL CCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH TDKVDMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKA HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHH IRALVANEPELSTQVVKNWLQQDNG HHHHHCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure STDMIVSTDSGMSGVQQENKSGVLGNLGSADMLRQVTMILALAICLALAVFVMMWAQEP CCCEEEECCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC EYRPLGKFEAQEMIQVLDVLDKNKIPYQVDFDVLRVPEDKYQDIRLLLSRNGVDAASTTN CCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCEEECCCHHHHHHHHHHHCCCCCCCCCCC QDFLSQDMGFGVSQRLEQARLKHSQEQNLARTIEELKSVSRAKVILALPKENVFARNQSK HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCC ASATVVVTSRRGGLGQEEVDAIVDIVASAVQGLEPTRVTVTDSNGRLLNSGSQDGASARA CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCHHHHH RRELELVKQKEAEYRAKVDAILMPILGPENYTSQVDVTMDFTAVEQTSKRFNPDLPAVRS HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCHHHH EMTLETQTSGEANMGIPGALSNQPPMESNIPQTLQEAQDKAQANGNSHREATRNYELDTT CCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCHH ISHTRQQIGVVRRVSVSVAVDYKTGEANTEGQVNRVARTEAELANIRRLLEGAVGFSGQR HHHHHHHHHHHHEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC GDSIEVVTVPFMDQLVEEVPELPMWEQPWFWKAMKLASGSLAILVLILFVVRPLLKKLLL CCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH TDKVDMPDDGRLGHELAEIEDQFAADTLGMLNASDAEYSYADDGSILIPNLHKDDDMIKA HCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCHHHHHH IRALVANEPELSTQVVKNWLQQDNG HHHHHCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8675317; 10984043 [H]