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The map label for this gene is fliR [H]

Identifier: 119775420

GI number: 119775420

Start: 2752162

End: 2752950

Strand: Reverse

Name: fliR [H]

Synonym: Sama_2285

Alternate gene names: 119775420

Gene position: 2752950-2752162 (Counterclockwise)

Preceding gene: 119775421

Following gene: 119775419

Centisome position: 63.93

GC content: 54.5

Gene sequence:

>789_bases
ATGGACGTCCTCCTTGATACTCTGATGGAGACTATCAAGGCCTATACCTGGCCCTTGTTTCGCATTTCCGCGATGTTTAT
GGTGATGCCGGTGTTTGGCGCCAATACAACGCCGGTGCGGGTGAGGCTGCTGTTATCCGTTGCCGTGACCTTTGCCGTGA
GCCCCATGTTACCGCCCATGCCCCAGGGCGAGCTGTTTGCCTTAAGCTCAGTCTTTATCAGCGCCCAACAAGTCCTGATT
GGTGTTGCCATGGGACTGGTTGCATTGATGATGTTGCAGATTTTCGTACTCACCGGTCAAATCATAGGGATGCAGACGAG
TCTCGGATTCTCATTCATGGTGGACCCCGGCTCCGGGCAGCAAACACCTGTGCTGGGTAATTTCTTCCTCCTGCTTGCCA
CCCTGATTTTCCTTGCCGTGGACGGCCATCTCACCATGATCCGCATGTTGGTGATGAGCTTTGATACCCTGCCTGTGTCT
ATGACTGGCATCACCCTGGCTAACTATCACAGCCTGGCGCTGTGGGGCAGCTACATGTTCGGTGCGGCGCTCACCATGTC
GCTGTCGGCAATTGTTGCGCTGCTGCTGATCAACCTGTCGTTTGGGGTCATGACCCGGGCAGCTCCGCAGCTAAATATCT
TTGCCATCGGTTTCCCGGTGGTGATGATTAGTGGCCTCTTTATCCTCTGGTTGACCCTGGCACCTGTGATGTCCCACTTC
GGTGAGATTTGGGAAGCGGCCCAGGTGTTGTTGTGTGACATTACCCATATTCAATGCCGGGTGAACTGA

Upstream 100 bases:

>100_bases
TGACTTTGTTGGCGTTGATGATGGCGGGGCATTGGTTGGTGAGAACCATGATGGACTTCTTTTTGGAGATGGTGCATCTC
ATTCCGTCGGTAGTAGGGTG

Downstream 100 bases:

>100_bases
CATGGCAGAAAACGATACCAGTCAGGAACGTACAGAGGAGCCCACGGGGAGGCGACTTGAACAGGCCAGAGAGAAAGGCC
AGGTCGCCCGCTCCAAAGAA

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MDVLLDTLMETIKAYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPMPQGELFALSSVFISAQQVLI
GVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQQTPVLGNFFLLLATLIFLAVDGHLTMIRMLVMSFDTLPVS
MTGITLANYHSLALWGSYMFGAALTMSLSAIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHF
GEIWEAAQVLLCDITHIQCRVN

Sequences:

>Translated_262_residues
MDVLLDTLMETIKAYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPMPQGELFALSSVFISAQQVLI
GVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQQTPVLGNFFLLLATLIFLAVDGHLTMIRMLVMSFDTLPVS
MTGITLANYHSLALWGSYMFGAALTMSLSAIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHF
GEIWEAAQVLLCDITHIQCRVN
>Mature_262_residues
MDVLLDTLMETIKAYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPMPQGELFALSSVFISAQQVLI
GVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQQTPVLGNFFLLLATLIFLAVDGHLTMIRMLVMSFDTLPVS
MTGITLANYHSLALWGSYMFGAALTMSLSAIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHF
GEIWEAAQVLLCDITHIQCRVN

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=244, Percent_Identity=36.8852459016393, Blast_Score=121, Evalue=4e-29,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28505; Mature: 28505

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
8.0 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
8.0 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVLLDTLMETIKAYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PQGELFALSSVFISAQQVLIGVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCC
QTPVLGNFFLLLATLIFLAVDGHLTMIRMLVMSFDTLPVSMTGITLANYHSLALWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCEEECCHHHHHHHHHHHH
GAALTMSLSAIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
GEIWEAAQVLLCDITHIQCRVN
HHHHHHHHHHHHEEEEEEEEEC
>Mature Secondary Structure
MDVLLDTLMETIKAYTWPLFRISAMFMVMPVFGANTTPVRVRLLLSVAVTFAVSPMLPPM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
PQGELFALSSVFISAQQVLIGVAMGLVALMMLQIFVLTGQIIGMQTSLGFSFMVDPGSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEECCCCCC
QTPVLGNFFLLLATLIFLAVDGHLTMIRMLVMSFDTLPVSMTGITLANYHSLALWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEECCEEECCHHHHHHHHHHHH
GAALTMSLSAIVALLLINLSFGVMTRAAPQLNIFAIGFPVVMISGLFILWLTLAPVMSHF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
GEIWEAAQVLLCDITHIQCRVN
HHHHHHHHHHHHEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]