Click here to switch to the map view.

The map label for this gene is flhF [H]

Identifier: 119775417

GI number: 119775417

Start: 2747424

End: 2748815

Strand: Reverse

Name: flhF [H]

Synonym: Sama_2282

Alternate gene names: 119775417

Gene position: 2748815-2747424 (Counterclockwise)

Preceding gene: 119775418

Following gene: 119775416

Centisome position: 63.83

GC content: 52.37

Gene sequence:

>1392_bases
TTGAAAATAAAACGTTTTTTTGCAAAAGATATGCGTGCCGCTCTGGCGCAGGTAAAAGAAACCCTCGGTGCTGACGCTGT
TATCATGTCCAATAAAAAAGTCACCGGCGGGATCGAAATCGTGGCAGCGGTTGATTATGACGAGCCCAAGCCTTCGATGG
AGCCCAAGGTCGCTGCACCCAACCCTTTCGACATAAGTGACGATAAGGTGTCCCTGGGGGGGCGTGCGCCTGTGCGTACC
AACCGTCAAAAAGTCAACGAGGCACCGGCCGACTCATTGCAGGCCTTGCTTGAGCGTCAACAAAGCCGCATGAACCAGCA
GATGGGCCATTCGGTTGAAGCCGATGACATGCCTGCCTGGGCCCGAGGACTCGAAGCGCCGGCTGCGCCCAAAATGAAAG
AAGCTCCCCGTCAGGCCTCGTTTACTCCCGATGCCGATAAAAACCGTGCTCCGGGCCGCCAGCAAATTGAACTGGACGCC
ATGAAAGAAGAGCTGGCATCACTGCGCAATTTACTGACCCATCAGGTCTCTTCCCTGATGATGGAACAGAAAAATCGTAC
CGATCCTGTGGGCGCCATGCTCGAAACCCGCCTGCTGGAGGCAGAGTTCTCTCCCGCTGTGGCCGCAAAACTGGCGGGAT
TGTCTCAGCACTACAACCCAGCGGAACTGGTCAAGGCTCTGCCCCAAAGTTTGGCAAATATGCTGGACAATCAAGGTGAT
GATATTGTAAGGCGTGGTGGAGTTGTCGCCTTTGTTGGGCCAACTGGTGTTGGTAAAACCACGTCTATTGCCAAAATTGC
CGCCCGATTTGCTGCTCATCATGGCGCGGATCAGGTTGCGCTCATCACCACCGACCATTATCGCATTGGAGCCTTTGAGC
AATTGGCAACTTATGGCAAAATCATGGGGTGCCCTGTTAAGCAAGCTCATGATCTCAATGAGTTGCAACAAATTCTTTAT
CAGCTGCGCAATCGCAAGCTAGTATTGATAGATACCGCCGGTATGGGACAGCGAGATATGCGACTGGTGGAGCAATTGGA
TAATTTGACGGCTAACAGTGCCTTGCCGATCCGCAGTTATCTGGTATTGTCAGCAACGTCGCAACGTCGTGTGCTTCAGG
ATGCGGTTAAACATTTCCAGCGCATTCCTTTATCCGGCGCTGTACTGACCAAACTGGATGAATCTGTTTCTCTGGCCGGT
GCATTAAGCGTACTTATCCAGAGTGGGCTGCCACTGAGTTATGTGACTGATGGGCAAAGAGTTCCTGAAGATATGAAAGT
CGCAGACACCCTGGCGTTGGCAAGACAGGCGCTTGATGCCCTGAATGAACCTGAGTATCAGGGCATCGACAACAATATGT
GGTCGGAAAGCACGACCTTTGCGTTCGAGTAA

Upstream 100 bases:

>100_bases
ATACACCATTCCCAACCTGAGGGTGATTTCCTATCAGGAAATTCCCGATGAGAAGCAGATAAGAATAGTGTCAGCCGTGG
GCCAGTAAGAGGGTAGTAAA

Downstream 100 bases:

>100_bases
AGCTATGACCCGTGATCAAGCAAGCGGTTTACGTATGATGAATCAGCCATATAACGAAAAAGTAAAAGTCATTGCCGTGA
CAGGCGGCAAAGGTGGGGTA

Product: flagellar biosynthesis regulator FlhF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 463

Protein sequence:

>463_residues
MKIKRFFAKDMRAALAQVKETLGADAVIMSNKKVTGGIEIVAAVDYDEPKPSMEPKVAAPNPFDISDDKVSLGGRAPVRT
NRQKVNEAPADSLQALLERQQSRMNQQMGHSVEADDMPAWARGLEAPAAPKMKEAPRQASFTPDADKNRAPGRQQIELDA
MKEELASLRNLLTHQVSSLMMEQKNRTDPVGAMLETRLLEAEFSPAVAAKLAGLSQHYNPAELVKALPQSLANMLDNQGD
DIVRRGGVVAFVGPTGVGKTTSIAKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELQQILY
QLRNRKLVLIDTAGMGQRDMRLVEQLDNLTANSALPIRSYLVLSATSQRRVLQDAVKHFQRIPLSGAVLTKLDESVSLAG
ALSVLIQSGLPLSYVTDGQRVPEDMKVADTLALARQALDALNEPEYQGIDNNMWSESTTFAFE

Sequences:

>Translated_463_residues
MKIKRFFAKDMRAALAQVKETLGADAVIMSNKKVTGGIEIVAAVDYDEPKPSMEPKVAAPNPFDISDDKVSLGGRAPVRT
NRQKVNEAPADSLQALLERQQSRMNQQMGHSVEADDMPAWARGLEAPAAPKMKEAPRQASFTPDADKNRAPGRQQIELDA
MKEELASLRNLLTHQVSSLMMEQKNRTDPVGAMLETRLLEAEFSPAVAAKLAGLSQHYNPAELVKALPQSLANMLDNQGD
DIVRRGGVVAFVGPTGVGKTTSIAKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELQQILY
QLRNRKLVLIDTAGMGQRDMRLVEQLDNLTANSALPIRSYLVLSATSQRRVLQDAVKHFQRIPLSGAVLTKLDESVSLAG
ALSVLIQSGLPLSYVTDGQRVPEDMKVADTLALARQALDALNEPEYQGIDNNMWSESTTFAFE
>Mature_463_residues
MKIKRFFAKDMRAALAQVKETLGADAVIMSNKKVTGGIEIVAAVDYDEPKPSMEPKVAAPNPFDISDDKVSLGGRAPVRT
NRQKVNEAPADSLQALLERQQSRMNQQMGHSVEADDMPAWARGLEAPAAPKMKEAPRQASFTPDADKNRAPGRQQIELDA
MKEELASLRNLLTHQVSSLMMEQKNRTDPVGAMLETRLLEAEFSPAVAAKLAGLSQHYNPAELVKALPQSLANMLDNQGD
DIVRRGGVVAFVGPTGVGKTTSIAKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGKIMGCPVKQAHDLNELQQILY
QLRNRKLVLIDTAGMGQRDMRLVEQLDNLTANSALPIRSYLVLSATSQRRVLQDAVKHFQRIPLSGAVLTKLDESVSLAG
ALSVLIQSGLPLSYVTDGQRVPEDMKVADTLALARQALDALNEPEYQGIDNNMWSESTTFAFE

Specific function: Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum [H]

COG id: COG1419

COG function: function code N; Flagellar GTP-binding protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Escherichia coli, GI1789874, Length=190, Percent_Identity=29.4736842105263, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1788963, Length=179, Percent_Identity=26.8156424581006, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6325345, Length=190, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR020006 [H]

Pfam domain/function: PF00448 SRP54 [H]

EC number: NA

Molecular weight: Translated: 50526; Mature: 50526

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKRFFAKDMRAALAQVKETLGADAVIMSNKKVTGGIEIVAAVDYDEPKPSMEPKVAAP
CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCEEEEEEECCCCCCCCCCCCCCCC
NPFDISDDKVSLGGRAPVRTNRQKVNEAPADSLQALLERQQSRMNQQMGHSVEADDMPAW
CCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ARGLEAPAAPKMKEAPRQASFTPDADKNRAPGRQQIELDAMKEELASLRNLLTHQVSSLM
HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEQKNRTDPVGAMLETRLLEAEFSPAVAAKLAGLSQHYNPAELVKALPQSLANMLDNQGD
HHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
DIVRRGGVVAFVGPTGVGKTTSIAKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGK
HHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
IMGCPVKQAHDLNELQQILYQLRNRKLVLIDTAGMGQRDMRLVEQLDNLTANSALPIRSY
HHCCCCHHHCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHH
LVLSATSQRRVLQDAVKHFQRIPLSGAVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQR
HEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
VPEDMKVADTLALARQALDALNEPEYQGIDNNMWSESTTFAFE
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure
MKIKRFFAKDMRAALAQVKETLGADAVIMSNKKVTGGIEIVAAVDYDEPKPSMEPKVAAP
CCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEECCCEEEEEEECCCCCCCCCCCCCCCC
NPFDISDDKVSLGGRAPVRTNRQKVNEAPADSLQALLERQQSRMNQQMGHSVEADDMPAW
CCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
ARGLEAPAAPKMKEAPRQASFTPDADKNRAPGRQQIELDAMKEELASLRNLLTHQVSSLM
HHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEQKNRTDPVGAMLETRLLEAEFSPAVAAKLAGLSQHYNPAELVKALPQSLANMLDNQGD
HHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
DIVRRGGVVAFVGPTGVGKTTSIAKIAARFAAHHGADQVALITTDHYRIGAFEQLATYGK
HHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
IMGCPVKQAHDLNELQQILYQLRNRKLVLIDTAGMGQRDMRLVEQLDNLTANSALPIRSY
HHCCCCHHHCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHH
LVLSATSQRRVLQDAVKHFQRIPLSGAVLTKLDESVSLAGALSVLIQSGLPLSYVTDGQR
HEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
VPEDMKVADTLALARQALDALNEPEYQGIDNNMWSESTTFAFE
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]