| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is capD [H]
Identifier: 119775379
GI number: 119775379
Start: 2708203
End: 2710137
Strand: Reverse
Name: capD [H]
Synonym: Sama_2244
Alternate gene names: 119775379
Gene position: 2710137-2708203 (Counterclockwise)
Preceding gene: 119775380
Following gene: 119775378
Centisome position: 62.94
GC content: 48.68
Gene sequence:
>1935_bases ATGGACTTTTTCCAATTTTTATTTTCGCTTAAGCGGCCACACAAACGTATGGTTAGCGTGGCGGTTGACTCAGTGTTTTT GGTCTTGTCCTTCTGGTTTGCGTTGTTCGTGAGGCTGGACTCTGTTGAGGTAGTGCTTAACAGTCAATTTTGGCTGCTTA TTGCACTGGTTTGCCCAGTGAGTATTGCGGCGTTTGTCAAGCTGGGTCTCTATCGTGCAGTGCTCAGGTATCTCGGTACT CAGGCAATGACAGCCATAGTGCTTGGTGTGATTGTTAGCACGCTTGCCATGGTGAGTTTTGCTTACTTTTTGTCGGTAGA CTTGCCGCGAACGGTTCCATTTATCTTTGCTTCCTTTGCGTTGGTATTCGTAGGCGGGGCCAGAGCGCTGATGCGGTCAC TGGTGGGGAATGGCATTAACCGTCGAGGTGAGCCTGTCATCATTTATGGTGCTGGTGTAAGTGGAAGGCAAACCGCGTTG GCGCTTGCACAAAGTCATGAATACCATCCTTTCGCGTTTGTCGATGACGATGAAACCTTGCATGGCACTGTGATCCAGGG GCTACATGTGCATTCCCCTTCAATCATAAAAAAACTGATTAAGCAGCAAAAAGCGTCAAGAGTGCTTTTGGCCATGCCAA GTGCGAGCCGGGCACGTCGTCAACAAATTTTGCAGACTCTTGAACCTTTATCGGTAAAGGTAATGACCTTGCCCGCCATG GCTGATTTAGTCAGTGGTAATAAGCTGTTCAGTGACGTAAAAGAAGTAGAGATTGAAGACTTACTTGGCAGGGATGCGGT AGCGCCAAGAAAGGATTTAATGGCGGCTAACATTACCGGTAAAGTCGTGATGGTGACAGGTGCGGGTGGTTCCATCGGCT CTGAACTGTGCAGGCAGATATTACGACTGGCGCCACGCAAGCTGGTGTTGTTTGAGTTGTCCGAGTTTGGTCTTTACTCC ATCGAACGGGAACTTCAGGCGATTAGAGCAGAGCTCGGTCTCGACGTTGAACTATTCCCTATGATGGGCTCAGTACAACG CCAAAATCGTGTTCAGGCCGTCATGGAAGCGTTTAAAGTACAAACTGTTTATCATGCAGCGGCTTATAAGCATGTTCCCC TGGTTGAGCACAATGTGGTAGAAGGGGTTCGCAATAATGTATTTGGCACCCTTTATACGGCTCAAGCGGCAATAGCGACC GGTGTTGAGACTTTTGTTCTCATTTCAACGGATAAAGCGGTGCGCCCCACGAATGTGATGGGTACCACCAAACGAATGGC CGAGCTGGTGCTTCAAGCGCTTTCGAAACTGAATTCCGGTACGCGTTTTTGTATGGTGCGTTTTGGTAACGTACTTGGCT CGAGTGGTTCTGTGGTGCCTTTGTTCCGTAAACAAATTGCTAACGGTGGCCCCGTTACGGTCACTCATCCTGAAATTACC CGATTTTTTATGACAATTCCTGAAGCATCACAGCTGGTTATTCAGGCCGGGGCTATGGGTATAGGTGGCGACGTTTTTGT ACTCGATATGGGGCAATCCGTTAAAATTGTCGACCTTGCCCGTAAGATGATTCGGCTGTCAGGCTTCGAAGTGAAAGATG AGCATAATCCAGATGGGGATATCGAAATCCAGTTTAGTGGTCTTCGTCCCGGGGAGAAGCTGTACGAAGAATTGCTTATC GGCGATAACGTTGAAGGCACTGGGCACGAGCGGATTATGACAGCCCATGAAGTGTTCTTAACGTGGGAAGAGCTCAAGCC AGTACTCGACAAACTGGATATGGCTTGTCACGCGTTTGATCATGAATCCATTCGCGAGCTGATGCTGAAGGCGCCCACAG GTTTTAATCCAACAGATGGGATCTGTGATCTTGTATGGTTAAACCGGCGCCATGTCGAAGACAGATCAAACGTTGTGGCG TTGAAAGGCCAGTAA
Upstream 100 bases:
>100_bases AGTCGCTGATTGGGTAACCCTTGCACCACCGACATGCTTAACCCTGTAAAGGCACTGGGCTTGGTTGATTCGCTCTTTTT GTTCAAAGGGAGGTAGAAAA
Downstream 100 bases:
>100_bases GTGGCAGTCAGGCATCAATAAATTGTTCATTGAATGCGCTTGTATTTAACATTGTGTAGTTGTTCAAGGCCAGGGTTATG CCTGGCCTTCTGTTTTTGGA
Product: polysaccharide biosynthesis protein
Products: UDPglucoseal [C]
Alternate protein names: NA
Number of amino acids: Translated: 644; Mature: 644
Protein sequence:
>644_residues MDFFQFLFSLKRPHKRMVSVAVDSVFLVLSFWFALFVRLDSVEVVLNSQFWLLIALVCPVSIAAFVKLGLYRAVLRYLGT QAMTAIVLGVIVSTLAMVSFAYFLSVDLPRTVPFIFASFALVFVGGARALMRSLVGNGINRRGEPVIIYGAGVSGRQTAL ALAQSHEYHPFAFVDDDETLHGTVIQGLHVHSPSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSVKVMTLPAM ADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSIGSELCRQILRLAPRKLVLFELSEFGLYS IERELQAIRAELGLDVELFPMMGSVQRQNRVQAVMEAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAT GVETFVLISTDKAVRPTNVMGTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVKDEHNPDGDIEIQFSGLRPGEKLYEELLI GDNVEGTGHERIMTAHEVFLTWEELKPVLDKLDMACHAFDHESIRELMLKAPTGFNPTDGICDLVWLNRRHVEDRSNVVA LKGQ
Sequences:
>Translated_644_residues MDFFQFLFSLKRPHKRMVSVAVDSVFLVLSFWFALFVRLDSVEVVLNSQFWLLIALVCPVSIAAFVKLGLYRAVLRYLGT QAMTAIVLGVIVSTLAMVSFAYFLSVDLPRTVPFIFASFALVFVGGARALMRSLVGNGINRRGEPVIIYGAGVSGRQTAL ALAQSHEYHPFAFVDDDETLHGTVIQGLHVHSPSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSVKVMTLPAM ADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSIGSELCRQILRLAPRKLVLFELSEFGLYS IERELQAIRAELGLDVELFPMMGSVQRQNRVQAVMEAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAT GVETFVLISTDKAVRPTNVMGTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVKDEHNPDGDIEIQFSGLRPGEKLYEELLI GDNVEGTGHERIMTAHEVFLTWEELKPVLDKLDMACHAFDHESIRELMLKAPTGFNPTDGICDLVWLNRRHVEDRSNVVA LKGQ >Mature_644_residues MDFFQFLFSLKRPHKRMVSVAVDSVFLVLSFWFALFVRLDSVEVVLNSQFWLLIALVCPVSIAAFVKLGLYRAVLRYLGT QAMTAIVLGVIVSTLAMVSFAYFLSVDLPRTVPFIFASFALVFVGGARALMRSLVGNGINRRGEPVIIYGAGVSGRQTAL ALAQSHEYHPFAFVDDDETLHGTVIQGLHVHSPSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSVKVMTLPAM ADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSIGSELCRQILRLAPRKLVLFELSEFGLYS IERELQAIRAELGLDVELFPMMGSVQRQNRVQAVMEAFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIAT GVETFVLISTDKAVRPTNVMGTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT RFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVKDEHNPDGDIEIQFSGLRPGEKLYEELLI GDNVEGTGHERIMTAHEVFLTWEELKPVLDKLDMACHAFDHESIRELMLKAPTGFNPTDGICDLVWLNRRHVEDRSNVVA LKGQ
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 70951; Mature: 70951
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFFQFLFSLKRPHKRMVSVAVDSVFLVLSFWFALFVRLDSVEVVLNSQFWLLIALVCPV CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHH SIAAFVKLGLYRAVLRYLGTQAMTAIVLGVIVSTLAMVSFAYFLSVDLPRTVPFIFASFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LVFVGGARALMRSLVGNGINRRGEPVIIYGAGVSGRQTALALAQSHEYHPFAFVDDDETL HHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEECCCCCC HGTVIQGLHVHSPSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSVKVMTLPAM CHHHHCCEECCCHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEHHHH ADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSIGSELCRQI HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCEEEEEECCCCCHHHHHHHHH LRLAPRKLVLFELSEFGLYSIERELQAIRAELGLDVELFPMMGSVQRQNRVQAVMEAFKV HHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH QTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIATGVETFVLISTDKAVRPTNVM HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCC GTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT HHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHCCCCCEEEECHHHH RFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVKDEHNPDGD HHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEECCCCCCCCC IEIQFSGLRPGEKLYEELLIGDNVEGTGHERIMTAHEVFLTWEELKPVLDKLDMACHAFD EEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC HESIRELMLKAPTGFNPTDGICDLVWLNRRHVEDRSNVVALKGQ HHHHHHHHHHCCCCCCCCCCCEEHHEECCCCCCCCCCEEEEECC >Mature Secondary Structure MDFFQFLFSLKRPHKRMVSVAVDSVFLVLSFWFALFVRLDSVEVVLNSQFWLLIALVCPV CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHH SIAAFVKLGLYRAVLRYLGTQAMTAIVLGVIVSTLAMVSFAYFLSVDLPRTVPFIFASFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LVFVGGARALMRSLVGNGINRRGEPVIIYGAGVSGRQTALALAQSHEYHPFAFVDDDETL HHHHCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCEEEECCCCCC HGTVIQGLHVHSPSIIKKLIKQQKASRVLLAMPSASRARRQQILQTLEPLSVKVMTLPAM CHHHHCCEECCCHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEHHHH ADLVSGNKLFSDVKEVEIEDLLGRDAVAPRKDLMAANITGKVVMVTGAGGSIGSELCRQI HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCEEEEEECCCCCHHHHHHHHH LRLAPRKLVLFELSEFGLYSIERELQAIRAELGLDVELFPMMGSVQRQNRVQAVMEAFKV HHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHH QTVYHAAAYKHVPLVEHNVVEGVRNNVFGTLYTAQAAIATGVETFVLISTDKAVRPTNVM HHHHHHHHHCCCCCHHHHHHHHHHHCCCEEHHHHHHHHHCCCEEEEEEECCCCCCCCCCC GTTKRMAELVLQALSKLNSGTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEIT HHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHCCCCCEEEECHHHH RFFMTIPEASQLVIQAGAMGIGGDVFVLDMGQSVKIVDLARKMIRLSGFEVKDEHNPDGD HHHHCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEECCCCCCCCC IEIQFSGLRPGEKLYEELLIGDNVEGTGHERIMTAHEVFLTWEELKPVLDKLDMACHAFD EEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC HESIRELMLKAPTGFNPTDGICDLVWLNRRHVEDRSNVVALKGQ HHHHHHHHHHCCCCCCCCCCCEEHHEECCCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]