| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775334
Identifier: 119775334
GI number: 119775334
Start: 2656764
End: 2657267
Strand: Reverse
Name: 119775334
Synonym: Sama_2199
Alternate gene names: NA
Gene position: 2657267-2656764 (Counterclockwise)
Preceding gene: 119775335
Following gene: 119775333
Centisome position: 61.71
GC content: 56.94
Gene sequence:
>504_bases ATGCGACTGGTGGACTTTACCGCGCTGGACAGCACCAGAGATTGGTACAGTGTGACCGACGCTCTTATGGGGGGCTTGTC CAGAGCGCAATTTCAAACATCGCCCAAGGGCCATGGACTGTTCACCGGCTATGTTTCCCGCGCCAATGGGGGTGGTTTTG CTTCTGTCTATCTGGATTTTGCGCCGAGGGATGTGAGCGCCTTTCAGGGGGTTGAACTGGAAATCGCCGCGCCAGAGCGC GCCTTTAAAGTGAACCTGAAAGACACACACTGTGGCGATCGCCATGTTTATCAGGCGCCGCTGGGAGACACCTATGCAGG GCAGGGGCTTTGGCGACGTTACCGCATTCCCTTCAGGCAGTTTGTGGCCATGCGACGGGGCCTGACAGTCACGGCGCCGC GGCTGGACCTTCATCAGCTAAAAAGCCTGGGTTTGGTGGCTGGCGGTGCAGATGAAGGGGAATTTCAGTTGCCGGTGCGC AGTATCTCCTTTTATAAGGCTTAA
Upstream 100 bases:
>100_bases AAGCCTAAGTTGCTAACAATGACAAATGGCTGAAAAAGCGGCAGTATTAAGTTACTGCCGCTTTTTTATTGTCAGCGAAA AAGATCCCGGGAGGTCACAG
Downstream 100 bases:
>100_bases CCACACGGCAGTTTAACCAAGTAGCAGCACCAACCTGTGTCTTTTGGGGTATCGTGCTTAACACGATTCTTCGCGCTATG GGGCCAACCACTCTTTCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 167; Mature: 167
Protein sequence:
>167_residues MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDFAPRDVSAFQGVELEIAAPER AFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQFVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVR SISFYKA
Sequences:
>Translated_167_residues MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDFAPRDVSAFQGVELEIAAPER AFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQFVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVR SISFYKA >Mature_167_residues MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDFAPRDVSAFQGVELEIAAPER AFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQFVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVR SISFYKA
Specific function: Unknown
COG id: COG0702
COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18494; Mature: 18494
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDF CCEEEEEECCCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEE APRDVSAFQGVELEIAAPERAFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQ CCCCCHHHCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHH FVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVRSISFYKA HHHHHCCCEEECCCCCHHHHHHCCEEECCCCCCEEEEEEEEEEEECC >Mature Secondary Structure MRLVDFTALDSTRDWYSVTDALMGGLSRAQFQTSPKGHGLFTGYVSRANGGGFASVYLDF CCEEEEEECCCCCCHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEE APRDVSAFQGVELEIAAPERAFKVNLKDTHCGDRHVYQAPLGDTYAGQGLWRRYRIPFRQ CCCCCHHHCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCHHHHHCCCHHH FVAMRRGLTVTAPRLDLHQLKSLGLVAGGADEGEFQLPVRSISFYKA HHHHHCCCEEECCCCCHHHHHHCCEEECCCCCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA