| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775323
Identifier: 119775323
GI number: 119775323
Start: 2647195
End: 2647554
Strand: Reverse
Name: 119775323
Synonym: Sama_2188
Alternate gene names: NA
Gene position: 2647554-2647195 (Counterclockwise)
Preceding gene: 119775324
Following gene: 119775322
Centisome position: 61.48
GC content: 55.0
Gene sequence:
>360_bases ATGCAGCATAATCCCGGATTTGTTGCCTTGGTTGAATCAATACTTCCCAAGGTTACAGAAATTACCGTTGAGGAGTATCA GGCTGACGACAGCTGGCAACTGCTCGACGTGCGTGAAGACCACGAATGGCTTAAAGACCGGCTTCCAGGTGCCAGACATC TGGGCCGCGGCATTCTTGAGCGGGATGTGGAAACCCGTTTCCCCGATAAATCAACTCCCTTGTTGCTCTACTGCGGTGGT GGCTATCGCTCTGCATTGGCGGCGTATAACCTGCAACTCATGGGGTACACCAAGGTGGCGTCTCTGGTGGGGGGCTACAA AGCCTGGGTTGCCCGTCAACTGCCGCTGGTGACCGACTAG
Upstream 100 bases:
>100_bases AGCGTAGCGAAGCCCATAACTGAACTTGTGCATGCATCACTTGTGAAGCCCTGACCATAGCACTACACTGGTCGCAAAAG GGCATCATAAGGAATTCAAA
Downstream 100 bases:
>100_bases GACCGCAGATGCAATATTTTCCCCTGTTTGTTGATACCCGCGATCGCTCGGTTCTGGTGGTGGGGGGCGGTGATGTGGCC GCCCGTAAGCTGGAGCTGCT
Product: rhodanese-like protein
Products: NA
Alternate protein names: Rhodanese Domain Protein; Rhodanese-Like Protein; Molybdopterin Biosynthesis Protein; Molybdopterin Biosynthesis Protein MoeB; Metallo-Beta-Lactamase Superfamily Protein; Molybdopterin Biosynthesis MoeB Protein; Rhodanese-Like Family Protein; Thiosulfate Sulfurtransferase GlpE; Rhodanese-Like Domain Protein; Rhodanese-Like Domain-Containing Protein; Rhodanese/Sulfurtransferase-Like Protein; Rhodanese/Moeb/Thif Domain Protein; Rhodanese-Related Sulfurtransferase
Number of amino acids: Translated: 119; Mature: 119
Protein sequence:
>119_residues MQHNPGFVALVESILPKVTEITVEEYQADDSWQLLDVREDHEWLKDRLPGARHLGRGILERDVETRFPDKSTPLLLYCGG GYRSALAAYNLQLMGYTKVASLVGGYKAWVARQLPLVTD
Sequences:
>Translated_119_residues MQHNPGFVALVESILPKVTEITVEEYQADDSWQLLDVREDHEWLKDRLPGARHLGRGILERDVETRFPDKSTPLLLYCGG GYRSALAAYNLQLMGYTKVASLVGGYKAWVARQLPLVTD >Mature_119_residues MQHNPGFVALVESILPKVTEITVEEYQADDSWQLLDVREDHEWLKDRLPGARHLGRGILERDVETRFPDKSTPLLLYCGG GYRSALAAYNLQLMGYTKVASLVGGYKAWVARQLPLVTD
Specific function: Unknown
COG id: COG0607
COG function: function code P; Rhodanese-related sulfurtransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13430; Mature: 13430
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQHNPGFVALVESILPKVTEITVEEYQADDSWQLLDVREDHEWLKDRLPGARHLGRGILE CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHH RDVETRFPDKSTPLLLYCGGGYRSALAAYNLQLMGYTKVASLVGGYKAWVARQLPLVTD HHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MQHNPGFVALVESILPKVTEITVEEYQADDSWQLLDVREDHEWLKDRLPGARHLGRGILE CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCHHHHHHHHHH RDVETRFPDKSTPLLLYCGGGYRSALAAYNLQLMGYTKVASLVGGYKAWVARQLPLVTD HHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA