| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775218
Identifier: 119775218
GI number: 119775218
Start: 2526023
End: 2527171
Strand: Reverse
Name: 119775218
Synonym: Sama_2083
Alternate gene names: NA
Gene position: 2527171-2526023 (Counterclockwise)
Preceding gene: 119775219
Following gene: 119775213
Centisome position: 58.69
GC content: 52.57
Gene sequence:
>1149_bases ATGAAACAAGCACCAGTCTCACTTGCGCTGGCCAGTGCGCTTCTGGCGATGTCAGGCTCAGCCATCGCCGAAACCGGAAA AACCGATTTTAAGTTTGGCGGCTATATCAAGGCCGACGTGATGTTCAGTGATTACAGCAATGGCGCACCGGAGTCGGGTG ATTTATCCCGCCAGTTTTATGTTCCGGGCACTATTTATGGTAAAGCGGGTAACGGCGAGCAAGTTGTCGATTTTCAGGCC CGTGAAACCCGTTTCAACTTTAAAACCACCACAGATTTGGATGGGCATACCCTGACCGGCTTTATCGAGCTGGATTTTAT GACCCACACCGACGGCAACGAGCGGGTTTCCAATAGCTACTCGCCCCGCATTCGCCATGCTTTTGTGACTTATGATAATT GGACCGTGGGGCAAACCTGGACCACGTTCCAAAATCCAGGCGCTTTGCCTGAAAACCTCGACTTTGTCGGTGCGGCTGAC GGTACCCCCTTCGTGCGTCAGGCGCAGCTGCGTTACACCAATGGCGGCTTCCAGTTCGCTGTTGAAAACCCCGAAACCAC GGTCAGTGATTATCAAACGGGCAGTCGTATTGTTGGTGGCAGCGGTATGATGCCCGATGTGGTCGCACGTTATAACTTCA AAACCGAAGGTGGCGCTTCCTTCTCTGTGGCGGCTATTGGTCGTCAGCTGACACTGGAAAACAGCAACTATGACGACTCA ACCCTGGGCTTCGGTGCCAGTTTTGCCGGTGTTATTCCACTGGGTAAAGACGATCTGAAGTTCACTGCCACCTGGGGTGA AGGTCTGGGCCGCTACATGGGGCTTAACTTTGCCAATGCCGCCTCCGTGGATGCTGACGGGCAACTCGATACCATTGGAT CCTTTGGCGGCTTTGTCTCTTATCGTCATTGGTGGAACGAGCAGTGGCGCTCAAGCTTCACCCTGTCTGGTATGAAGGTC GACAACAACGTCGATATCACCGGTGAGAACGTGAACAAAGATGCCTATTCAGCCTATGTGAACCTGCTGTACTCTCCCAG CAAGCCGCTGACCTTTGGTGTGGAATACATGTTTGCCACCAATAGCAAAGAAAATGGCGTGGACGGTGACCTGAATCGGG TCATTTTCTCGGCCAAATATGTGCTCTAA
Upstream 100 bases:
>100_bases CTTTTCTACTTTTGTCTCATAGACCTATTGCTAATATTTCCCCGGTAACAATTTGTTCATAGTTCCTTTGATACATAATA ACAATCAGGGAGCAACAAGA
Downstream 100 bases:
>100_bases GCGCATTCAGCTCCCAGACTGAGAAACGTAAAAGGCGAACATAGTTCGCCTTTTTTGTTGGATGCCGTCTCCCGGCTATC CCTTAAAACTGAATTCCATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 382; Mature: 382
Protein sequence:
>382_residues MKQAPVSLALASALLAMSGSAIAETGKTDFKFGGYIKADVMFSDYSNGAPESGDLSRQFYVPGTIYGKAGNGEQVVDFQA RETRFNFKTTTDLDGHTLTGFIELDFMTHTDGNERVSNSYSPRIRHAFVTYDNWTVGQTWTTFQNPGALPENLDFVGAAD GTPFVRQAQLRYTNGGFQFAVENPETTVSDYQTGSRIVGGSGMMPDVVARYNFKTEGGASFSVAAIGRQLTLENSNYDDS TLGFGASFAGVIPLGKDDLKFTATWGEGLGRYMGLNFANAASVDADGQLDTIGSFGGFVSYRHWWNEQWRSSFTLSGMKV DNNVDITGENVNKDAYSAYVNLLYSPSKPLTFGVEYMFATNSKENGVDGDLNRVIFSAKYVL
Sequences:
>Translated_382_residues MKQAPVSLALASALLAMSGSAIAETGKTDFKFGGYIKADVMFSDYSNGAPESGDLSRQFYVPGTIYGKAGNGEQVVDFQA RETRFNFKTTTDLDGHTLTGFIELDFMTHTDGNERVSNSYSPRIRHAFVTYDNWTVGQTWTTFQNPGALPENLDFVGAAD GTPFVRQAQLRYTNGGFQFAVENPETTVSDYQTGSRIVGGSGMMPDVVARYNFKTEGGASFSVAAIGRQLTLENSNYDDS TLGFGASFAGVIPLGKDDLKFTATWGEGLGRYMGLNFANAASVDADGQLDTIGSFGGFVSYRHWWNEQWRSSFTLSGMKV DNNVDITGENVNKDAYSAYVNLLYSPSKPLTFGVEYMFATNSKENGVDGDLNRVIFSAKYVL >Mature_382_residues MKQAPVSLALASALLAMSGSAIAETGKTDFKFGGYIKADVMFSDYSNGAPESGDLSRQFYVPGTIYGKAGNGEQVVDFQA RETRFNFKTTTDLDGHTLTGFIELDFMTHTDGNERVSNSYSPRIRHAFVTYDNWTVGQTWTTFQNPGALPENLDFVGAAD GTPFVRQAQLRYTNGGFQFAVENPETTVSDYQTGSRIVGGSGMMPDVVARYNFKTEGGASFSVAAIGRQLTLENSNYDDS TLGFGASFAGVIPLGKDDLKFTATWGEGLGRYMGLNFANAASVDADGQLDTIGSFGGFVSYRHWWNEQWRSSFTLSGMKV DNNVDITGENVNKDAYSAYVNLLYSPSKPLTFGVEYMFATNSKENGVDGDLNRVIFSAKYVL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41602; Mature: 41602
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQAPVSLALASALLAMSGSAIAETGKTDFKFGGYIKADVMFSDYSNGAPESGDLSRQFY CCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEE VPGTIYGKAGNGEQVVDFQARETRFNFKTTTDLDGHTLTGFIELDFMTHTDGNERVSNSY CCEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCHHHCCCC SPRIRHAFVTYDNWTVGQTWTTFQNPGALPENLDFVGAADGTPFVRQAQLRYTNGGFQFA CCCEEEEEEEECCEECCCEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCEEEE VENPETTVSDYQTGSRIVGGSGMMPDVVARYNFKTEGGASFSVAAIGRQLTLENSNYDDS ECCCCCCHHHCCCCCEEECCCCCCCHHHHHCCCCCCCCCEEEEEECCEEEEECCCCCCCC TLGFGASFAGVIPLGKDDLKFTATWGEGLGRYMGLNFANAASVDADGQLDTIGSFGGFVS CCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHH YRHWWNEQWRSSFTLSGMKVDNNVDITGENVNKDAYSAYVNLLYSPSKPLTFGVEYMFAT HHHHHCHHHCCEEEEEEEEECCCEEEECCCCCHHHHEEEEEEEECCCCCEEEEEEEEEEE NSKENGVDGDLNRVIFSAKYVL CCCCCCCCCCHHEEEEEEEECC >Mature Secondary Structure MKQAPVSLALASALLAMSGSAIAETGKTDFKFGGYIKADVMFSDYSNGAPESGDLSRQFY CCCCCHHHHHHHHHHHHCCCHHHHCCCCCEEECCEEEEEEEEECCCCCCCCCCCCCEEEE VPGTIYGKAGNGEQVVDFQARETRFNFKTTTDLDGHTLTGFIELDFMTHTDGNERVSNSY CCEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCEEEEEEEEEEEEECCCCHHHCCCC SPRIRHAFVTYDNWTVGQTWTTFQNPGALPENLDFVGAADGTPFVRQAQLRYTNGGFQFA CCCEEEEEEEECCEECCCEEEECCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCEEEE VENPETTVSDYQTGSRIVGGSGMMPDVVARYNFKTEGGASFSVAAIGRQLTLENSNYDDS ECCCCCCHHHCCCCCEEECCCCCCCHHHHHCCCCCCCCCEEEEEECCEEEEECCCCCCCC TLGFGASFAGVIPLGKDDLKFTATWGEGLGRYMGLNFANAASVDADGQLDTIGSFGGFVS CCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCHHH YRHWWNEQWRSSFTLSGMKVDNNVDITGENVNKDAYSAYVNLLYSPSKPLTFGVEYMFAT HHHHHCHHHCCEEEEEEEEECCCEEEECCCCCHHHHEEEEEEEECCCCCEEEEEEEEEEE NSKENGVDGDLNRVIFSAKYVL CCCCCCCCCCHHEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA