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The map label for this gene is ycfD [H]

Identifier: 119775200

GI number: 119775200

Start: 2501148

End: 2502266

Strand: Direct

Name: ycfD [H]

Synonym: Sama_2065

Alternate gene names: 119775200

Gene position: 2501148-2502266 (Clockwise)

Preceding gene: 119775199

Following gene: 119775202

Centisome position: 58.08

GC content: 54.87

Gene sequence:

>1119_bases
ATGTATAAGCTCAATCTCGATATTCAGGCGTTCCTCGCCAATGACTGGCAACAGGCCCCAAAAGTATTCAAAGGCGCTTT
CCCTGACTTTGAAGATCCCATTGCTGCAGACGAGCTCGCGGGTCTTGCCTGTGAAGAGGAAGTGTCCAGCCGCGTGGTTG
TCACCAAGGGTAACGACTGGGAAGTCATTTCCGGTCCCTTCGAAGACTACGACCGGTTTGGTGAGACCCATTGGCAGCTG
CTTGTGCAAGCCGTAAACCACTGGTACCCCGAATCCCAGCCCCTGGTGGAAGCCTTCAGATTCTTGCCAGACTGGCGCTT
TGATGACCTGATGGTGTCTTTCGCCACCCCGCAGGGCGGCGTGGGACCTCACATCGACAACTACGATGTGTTTATCATTC
AAGGCGAAGGCCAGCGCCGCTGGACCGTGGGCCCCAAGGGCAACTACCAGCGCCGCGGTGGTGTAACGACCTCACCCCTG
ATTGAAGACTTTGAGCCCATTATCGATGTCGTGCTGGAAAAAGGTGATGTGCTTTATATCCCGCCCGGCTTCCCTCATCA
AGGTGAAACCCTGACTCTGGCACTCTCTTATTCCATGGGGTATCGCGCGCCCAGCCAGCAGGAGCTTGCAGGACAAATTG
CCGATCAGTTGATGGATGAAGACAAGGGGCACAAGCGCTTTATCGCCGTGGATGGCGCCGCGAGCCATGGCACTGTGAGC
CTGGCAGAGCAGCAAGGCATCATGCAGCTTATCCGCGACCTTTGTAATGACACCGATAACGTCGTTAAGGTCCTCGGTAA
ACTCTTAAGTCAGAACCGCTTCGACCTGGATATCCAGGAAGATGAAAGCATCGATGCCGACGCCCTGGTTGAGGCTCTGA
ATGAAGGGGCTGTGCTGATGCGGATTGGTGGCCTTAAGGTGCTCAAAATGGAAGGCGACAGCCAGGCAAGGCTCTTTGTG
GCAGGCGAGAGTGTGATAATTGAAGGCGCTTCGGAAGAAGAGCTGATCGAGGTATCCAACTCAGTCAACGTCAATGCTGA
GCTGGCGCAGCTGCCACACTGGCAGGGCTTCTTTGTTCAGATGCTGCAAAAAGGCTATTTCTATCTCGGCGAAGACTGA

Upstream 100 bases:

>100_bases
GCAAGCTACATCGGCCGCGCCGAAGCCTTCGTGGACGAATTGAATTAATCCACTTAAATGGAGAGGCGGCAAGGGAAACC
AAGCCGCCTTTTTTAACACT

Downstream 100 bases:

>100_bases
CTACCTGACGGAACCTTGTCGAGTCTGTGAATAGTTTCGTTAAGACTCAGCCAAATAATCAAAAAGGCACCTAAAGGTGC
CTTTCCTGTTTTTGAGGTTG

Product: cupin 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MYKLNLDIQAFLANDWQQAPKVFKGAFPDFEDPIAADELAGLACEEEVSSRVVVTKGNDWEVISGPFEDYDRFGETHWQL
LVQAVNHWYPESQPLVEAFRFLPDWRFDDLMVSFATPQGGVGPHIDNYDVFIIQGEGQRRWTVGPKGNYQRRGGVTTSPL
IEDFEPIIDVVLEKGDVLYIPPGFPHQGETLTLALSYSMGYRAPSQQELAGQIADQLMDEDKGHKRFIAVDGAASHGTVS
LAEQQGIMQLIRDLCNDTDNVVKVLGKLLSQNRFDLDIQEDESIDADALVEALNEGAVLMRIGGLKVLKMEGDSQARLFV
AGESVIIEGASEEELIEVSNSVNVNAELAQLPHWQGFFVQMLQKGYFYLGED

Sequences:

>Translated_372_residues
MYKLNLDIQAFLANDWQQAPKVFKGAFPDFEDPIAADELAGLACEEEVSSRVVVTKGNDWEVISGPFEDYDRFGETHWQL
LVQAVNHWYPESQPLVEAFRFLPDWRFDDLMVSFATPQGGVGPHIDNYDVFIIQGEGQRRWTVGPKGNYQRRGGVTTSPL
IEDFEPIIDVVLEKGDVLYIPPGFPHQGETLTLALSYSMGYRAPSQQELAGQIADQLMDEDKGHKRFIAVDGAASHGTVS
LAEQQGIMQLIRDLCNDTDNVVKVLGKLLSQNRFDLDIQEDESIDADALVEALNEGAVLMRIGGLKVLKMEGDSQARLFV
AGESVIIEGASEEELIEVSNSVNVNAELAQLPHWQGFFVQMLQKGYFYLGED
>Mature_372_residues
MYKLNLDIQAFLANDWQQAPKVFKGAFPDFEDPIAADELAGLACEEEVSSRVVVTKGNDWEVISGPFEDYDRFGETHWQL
LVQAVNHWYPESQPLVEAFRFLPDWRFDDLMVSFATPQGGVGPHIDNYDVFIIQGEGQRRWTVGPKGNYQRRGGVTTSPL
IEDFEPIIDVVLEKGDVLYIPPGFPHQGETLTLALSYSMGYRAPSQQELAGQIADQLMDEDKGHKRFIAVDGAASHGTVS
LAEQQGIMQLIRDLCNDTDNVVKVLGKLLSQNRFDLDIQEDESIDADALVEALNEGAVLMRIGGLKVLKMEGDSQARLFV
AGESVIIEGASEEELIEVSNSVNVNAELAQLPHWQGFFVQMLQKGYFYLGED

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=375, Percent_Identity=41.0666666666667, Blast_Score=281, Evalue=4e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 41473; Mature: 41473

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKLNLDIQAFLANDWQQAPKVFKGAFPDFEDPIAADELAGLACEEEVSSRVVVTKGNDW
CEEECCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEECCCC
EVISGPFEDYDRFGETHWQLLVQAVNHWYPESQPLVEAFRFLPDWRFDDLMVSFATPQGG
EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
VGPHIDNYDVFIIQGEGQRRWTVGPKGNYQRRGGVTTSPLIEDFEPIIDVVLEKGDVLYI
CCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
PPGFPHQGETLTLALSYSMGYRAPSQQELAGQIADQLMDEDKGHKRFIAVDGAASHGTVS
CCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEE
LAEQQGIMQLIRDLCNDTDNVVKVLGKLLSQNRFDLDIQEDESIDADALVEALNEGAVLM
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCEEEE
RIGGLKVLKMEGDSQARLFVAGESVIIEGASEEELIEVSNSVNVNAELAQLPHWQGFFVQ
EECCEEEEEECCCCCEEEEEECCEEEEECCCHHHHHHHCCCCCCCCHHHHCCCCHHHHHH
MLQKGYFYLGED
HHHCCCEEECCC
>Mature Secondary Structure
MYKLNLDIQAFLANDWQQAPKVFKGAFPDFEDPIAADELAGLACEEEVSSRVVVTKGNDW
CEEECCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEECCCC
EVISGPFEDYDRFGETHWQLLVQAVNHWYPESQPLVEAFRFLPDWRFDDLMVSFATPQGG
EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEECCCCC
VGPHIDNYDVFIIQGEGQRRWTVGPKGNYQRRGGVTTSPLIEDFEPIIDVVLEKGDVLYI
CCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
PPGFPHQGETLTLALSYSMGYRAPSQQELAGQIADQLMDEDKGHKRFIAVDGAASHGTVS
CCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEE
LAEQQGIMQLIRDLCNDTDNVVKVLGKLLSQNRFDLDIQEDESIDADALVEALNEGAVLM
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHCCCEEEE
RIGGLKVLKMEGDSQARLFVAGESVIIEGASEEELIEVSNSVNVNAELAQLPHWQGFFVQ
EECCEEEEEECCCCCEEEEEECCEEEEECCCHHHHHHHCCCCCCCCHHHHCCCCHHHHHH
MLQKGYFYLGED
HHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]