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The map label for this gene is ycfH [H]

Identifier: 119775175

GI number: 119775175

Start: 2477769

End: 2478557

Strand: Reverse

Name: ycfH [H]

Synonym: Sama_2040

Alternate gene names: 119775175

Gene position: 2478557-2477769 (Counterclockwise)

Preceding gene: 119775176

Following gene: 119775173

Centisome position: 57.56

GC content: 51.46

Gene sequence:

>789_bases
TTGCTTATCGATTCCCATTGTCACCTCGACAGATTAAAAGCCGCCCCCTGTGATGCGTCTTTGGCAGATATGCTCAAAGG
CGCCAAGGAGAGGGGTGTTGACTATGTGCTCTGTGTCAACGTCCGTCAGAAGGGATTTGAATCCATGTGTGCCAGGGTCG
AGCAATTTGACAATGTGTTTCTGTCCAGTGGCGTGCATCCATTGGATGTAAAAGAAGGCCTGGATCTGAACGAGCTCAAA
GAGTTTGCGGCCCATCCCCGGGTGGTGGCTATTGGTGAAACCGGCTTGGATTACTATTACGCCGATGACAGTCGCGAGTT
GCAAATGCAGTGTTTTGAGCAGCAAATCGCGCTGGCCCGTGATGTTAATAAGCCACTGATTGTTCATACCCGGGATGCCC
GCGAAGATACCATCAGACTCCTGAAAGAGGGCGGTGCCGATACCGTGGGTGGGGTGCTGCATTGTTTTACCGAAAACTGG
GAAATGGCCAAGGCAGCCATGGATCTGGGCTTTTATATTTCGGTATCCGGGATAGTGACCTTCAAAAATGCTGCCGAGCT
CAGGGACGTAATCCGCAAGGTACCCAAGGACCGTCTGCTGGTTGAAACTGACTCACCTTATTTGGCACCGGTTCCTCATC
GTGGTCAGGAAAACCAACCCGCCTATGTTCGCGATGTCGCTGAATTTGTGGCAGAACTGCGTGGTGAAAAATTCCCCGAA
CTTGCTGAGTTCACCACGAATAACTTCTTTACCCTCTTTAAGGATGCTGCCCGTTTGGCTGGTCGCTGA

Upstream 100 bases:

>100_bases
CGAAAATCTGCTTTCCAGAGAGCTCGCGTCCGCCGATTTGACCTGTACCATGTAGGCCGCTATCCTTGCCATCTTTTTCA
CTATTGGCAGGATCCTCACT

Downstream 100 bases:

>100_bases
TTGGCAGATAAAAAAAGGCCCAAAACTATTCCAATTGTTTTGGGCCCAGGGGAATGGCTCATAAAGAGCCGTGCGCTATT
CGGTCGCAAAAGGGGATTAA

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MLIDSHCHLDRLKAAPCDASLADMLKGAKERGVDYVLCVNVRQKGFESMCARVEQFDNVFLSSGVHPLDVKEGLDLNELK
EFAAHPRVVAIGETGLDYYYADDSRELQMQCFEQQIALARDVNKPLIVHTRDAREDTIRLLKEGGADTVGGVLHCFTENW
EMAKAAMDLGFYISVSGIVTFKNAAELRDVIRKVPKDRLLVETDSPYLAPVPHRGQENQPAYVRDVAEFVAELRGEKFPE
LAEFTTNNFFTLFKDAARLAGR

Sequences:

>Translated_262_residues
MLIDSHCHLDRLKAAPCDASLADMLKGAKERGVDYVLCVNVRQKGFESMCARVEQFDNVFLSSGVHPLDVKEGLDLNELK
EFAAHPRVVAIGETGLDYYYADDSRELQMQCFEQQIALARDVNKPLIVHTRDAREDTIRLLKEGGADTVGGVLHCFTENW
EMAKAAMDLGFYISVSGIVTFKNAAELRDVIRKVPKDRLLVETDSPYLAPVPHRGQENQPAYVRDVAEFVAELRGEKFPE
LAEFTTNNFFTLFKDAARLAGR
>Mature_262_residues
MLIDSHCHLDRLKAAPCDASLADMLKGAKERGVDYVLCVNVRQKGFESMCARVEQFDNVFLSSGVHPLDVKEGLDLNELK
EFAAHPRVVAIGETGLDYYYADDSRELQMQCFEQQIALARDVNKPLIVHTRDAREDTIRLLKEGGADTVGGVLHCFTENW
EMAKAAMDLGFYISVSGIVTFKNAAELRDVIRKVPKDRLLVETDSPYLAPVPHRGQENQPAYVRDVAEFVAELRGEKFPE
LAEFTTNNFFTLFKDAARLAGR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=31.4814814814815, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=31.8518518518519, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=30.9090909090909, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI226061614, Length=264, Percent_Identity=29.9242424242424, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI225903424, Length=160, Percent_Identity=33.75, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI225903439, Length=231, Percent_Identity=29.004329004329, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI14042943, Length=231, Percent_Identity=29.004329004329, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI226061595, Length=232, Percent_Identity=31.0344827586207, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=54.2307692307692, Blast_Score=272, Evalue=1e-74,
Organism=Escherichia coli, GI48994985, Length=240, Percent_Identity=35.8333333333333, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=31.640625, Blast_Score=124, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17559024, Length=265, Percent_Identity=29.4339622641509, Blast_Score=120, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=29.1044776119403, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17543026, Length=181, Percent_Identity=32.0441988950276, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565396, Length=175, Percent_Identity=32, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24648690, Length=228, Percent_Identity=29.8245614035088, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24586117, Length=238, Percent_Identity=28.1512605042017, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI221330018, Length=271, Percent_Identity=26.5682656826568, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29398; Mature: 29398

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDSHCHLDRLKAAPCDASLADMLKGAKERGVDYVLCVNVRQKGFESMCARVEQFDNVF
CEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
LSSGVHPLDVKEGLDLNELKEFAAHPRVVAIGETGLDYYYADDSRELQMQCFEQQIALAR
HHCCCCCCCHHCCCCHHHHHHHHCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHH
DVNKPLIVHTRDAREDTIRLLKEGGADTVGGVLHCFTENWEMAKAAMDLGFYISVSGIVT
CCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCEEEEEEEEEE
FKNAAELRDVIRKVPKDRLLVETDSPYLAPVPHRGQENQPAYVRDVAEFVAELRGEKFPE
ECCHHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
LAEFTTNNFFTLFKDAARLAGR
HHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLIDSHCHLDRLKAAPCDASLADMLKGAKERGVDYVLCVNVRQKGFESMCARVEQFDNVF
CEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
LSSGVHPLDVKEGLDLNELKEFAAHPRVVAIGETGLDYYYADDSRELQMQCFEQQIALAR
HHCCCCCCCHHCCCCHHHHHHHHCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHH
DVNKPLIVHTRDAREDTIRLLKEGGADTVGGVLHCFTENWEMAKAAMDLGFYISVSGIVT
CCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHCEEEEEEEEEE
FKNAAELRDVIRKVPKDRLLVETDSPYLAPVPHRGQENQPAYVRDVAEFVAELRGEKFPE
ECCHHHHHHHHHHCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
LAEFTTNNFFTLFKDAARLAGR
HHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]