| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775165
Identifier: 119775165
GI number: 119775165
Start: 2469214
End: 2469573
Strand: Direct
Name: 119775165
Synonym: Sama_2030
Alternate gene names: NA
Gene position: 2469214-2469573 (Clockwise)
Preceding gene: 119775159
Following gene: 119775166
Centisome position: 57.34
GC content: 50.0
Gene sequence:
>360_bases ATGACCGACATGAATCCAAAACTCAGCAGTTTTATTGACAATATCAAAGAGTCCCAGTTGCTTTGGGGCCTGATGGATGC CGATGGCGAAGGCTGGGTAGTCTGTGATTCCAGTGAGTACGAGGACACAGACGTCATGCCTTTGTGGTCCAGCGAAGCCA ATGCACAAAAGCATTGCTGTGACGAATGGGCCGATTACAAAGCCACCGCCATTTCCCTGGTCGAGTTTCTCGAGTATTGG GTTGAAGATCTGAATCACGATGGCGTACTCATCGGCGTTGACTGGGAAGCCAACGAAGATTGTATGGAAGTTGACCCTAT CGATTTGGCTCAGGATCTCGCCGAGATTGAAGCCGAGTGA
Upstream 100 bases:
>100_bases TGCAACTCTGTGGCTAAAGCCGCATCAAAATAGAGAAAATCCTTGGGTTTGCGAGACCATCGCATATAATCAAGCGAACA TCTAATGCAGAGAACCAACT
Downstream 100 bases:
>100_bases GCAAAGAGGTTGCACTGACAGAGACGCCTTTCGATAAGAGGCATCTCTGCTGGTTTTGCGAAGAGCCCGCTGGAGGGCTC TTTACATTTGTCAGCCCACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 119; Mature: 118
Protein sequence:
>119_residues MTDMNPKLSSFIDNIKESQLLWGLMDADGEGWVVCDSSEYEDTDVMPLWSSEANAQKHCCDEWADYKATAISLVEFLEYW VEDLNHDGVLIGVDWEANEDCMEVDPIDLAQDLAEIEAE
Sequences:
>Translated_119_residues MTDMNPKLSSFIDNIKESQLLWGLMDADGEGWVVCDSSEYEDTDVMPLWSSEANAQKHCCDEWADYKATAISLVEFLEYW VEDLNHDGVLIGVDWEANEDCMEVDPIDLAQDLAEIEAE >Mature_118_residues TDMNPKLSSFIDNIKESQLLWGLMDADGEGWVVCDSSEYEDTDVMPLWSSEANAQKHCCDEWADYKATAISLVEFLEYWV EDLNHDGVLIGVDWEANEDCMEVDPIDLAQDLAEIEAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13512; Mature: 13381
Theoretical pI: Translated: 3.42; Mature: 3.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDMNPKLSSFIDNIKESQLLWGLMDADGEGWVVCDSSEYEDTDVMPLWSSEANAQKHCC CCCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH DEWADYKATAISLVEFLEYWVEDLNHDGVLIGVDWEANEDCMEVDPIDLAQDLAEIEAE HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure TDMNPKLSSFIDNIKESQLLWGLMDADGEGWVVCDSSEYEDTDVMPLWSSEANAQKHCC CCCCHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH DEWADYKATAISLVEFLEYWVEDLNHDGVLIGVDWEANEDCMEVDPIDLAQDLAEIEAE HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA