Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119775092

Identifier: 119775092

GI number: 119775092

Start: 2387582

End: 2387950

Strand: Reverse

Name: 119775092

Synonym: Sama_1957

Alternate gene names: NA

Gene position: 2387950-2387582 (Counterclockwise)

Preceding gene: 119775093

Following gene: 119775091

Centisome position: 55.45

GC content: 52.03

Gene sequence:

>369_bases
ATGATAAGACTCAAACCAGGATTTGACCACGATACCATTGCTTTAGAAGCATCAGGGATGATTGAGGCCGATGACTACAG
CCGAGTATTGATCCCCGCCCTCGAACAAGCGCTCAAAGATCATGCATCGGTGCGTATCTGGTACGAAATTGCTGATGGAT
GCCGGGGTGTCAGCCTGCTGTCGCTATGGCAGGACGTGCTGCTTGGGCTCTTTCATCTCGATGACTTCAGGCGTATCGCC
ATTCTCACCAATCGTCCCGCTTTTCGCCGCATGGGCGAACTCATTGGCTTATTCATGCCATGCCCCGTCTGCGTGTTCTC
CTTGGATGAGGTGCAAATCGCCAAAATCTGGTTGTGTCAAAGTCGCTGA

Upstream 100 bases:

>100_bases
TTGCTGATTTCTCTGGGCTCATCAAAAATTTATTCGACCAGGAAATTGTCAAGCTGACCGCATGATGCGCCGTCGTGGTT
CACACTCTGATGGGGTGAAC

Downstream 100 bases:

>100_bases
AATCGGTGCTTTTTATTGGCAAGCGCCAGCGCTTCCGTTATGGTGGTTCAGGTTAGGCGTTACCCTCGCTTGCTTGTAAT
TAATTGTTTTTCAGGATGTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MIRLKPGFDHDTIALEASGMIEADDYSRVLIPALEQALKDHASVRIWYEIADGCRGVSLLSLWQDVLLGLFHLDDFRRIA
ILTNRPAFRRMGELIGLFMPCPVCVFSLDEVQIAKIWLCQSR

Sequences:

>Translated_122_residues
MIRLKPGFDHDTIALEASGMIEADDYSRVLIPALEQALKDHASVRIWYEIADGCRGVSLLSLWQDVLLGLFHLDDFRRIA
ILTNRPAFRRMGELIGLFMPCPVCVFSLDEVQIAKIWLCQSR
>Mature_122_residues
MIRLKPGFDHDTIALEASGMIEADDYSRVLIPALEQALKDHASVRIWYEIADGCRGVSLLSLWQDVLLGLFHLDDFRRIA
ILTNRPAFRRMGELIGLFMPCPVCVFSLDEVQIAKIWLCQSR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13903; Mature: 13903

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLKPGFDHDTIALEASGMIEADDYSRVLIPALEQALKDHASVRIWYEIADGCRGVSLL
CEECCCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH
SLWQDVLLGLFHLDDFRRIAILTNRPAFRRMGELIGLFMPCPVCVFSLDEVQIAKIWLCQ
HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHEECCCEEEEEEEEEC
SR
CC
>Mature Secondary Structure
MIRLKPGFDHDTIALEASGMIEADDYSRVLIPALEQALKDHASVRIWYEIADGCRGVSLL
CEECCCCCCCCEEEEEECCCEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHH
SLWQDVLLGLFHLDDFRRIAILTNRPAFRRMGELIGLFMPCPVCVFSLDEVQIAKIWLCQ
HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHEECCCEEEEEEEEEC
SR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA