| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hisA
Identifier: 119775081
GI number: 119775081
Start: 2374027
End: 2374764
Strand: Direct
Name: hisA
Synonym: Sama_1946
Alternate gene names: 119775081
Gene position: 2374027-2374764 (Clockwise)
Preceding gene: 119775080
Following gene: 119775082
Centisome position: 55.13
GC content: 55.69
Gene sequence:
>738_bases ATGATCATTCCTGCAATTGACCTTATCGATGGTCAGGTGGTGCGCCTGTTTCAGGGCGATTACGCCAAAAAGACCGAATT TTCACTGGACCCCAAGAACCAGCTGCTGAGTTATCAGCAGGATGGCGCTGCACTCTTGCACCTTGTTGATCTAACCGGCG CTAAAGATCCGGACAAAAGGCAAACCAAGTTAATCGAAGAGATTGCGGCCAGTTTGTCCACCCCGCTGCAAGTCGGCGGC GGCATTCGCAGCGCTGCAGACGTGGATGCCCTGCTGAATGCGGGCGTTGCCCGGGTGGTTATCGGCTCGCTGGCTGTCAA ATCACCTGAGGTAGTACTGCGCCTTTTTGATAAGTATGGCGGCGATGCCATTTGTCTTGCCCTTGACGTCAATATAGATG CCGACGGCAACAAGATGGTGGCGGTTCACGGCTGGCAACAGGGCGGCGGCAAGTCGCTGGAATCCTTGGTGGATACCTTT ATGCCCGCAGGCCTTAAACATGCACTGGTGACCGACATCAGCCGCGATGGCACCATGACCGGCGCCAATACAGCCCTTTA CTGTGAACTGGCCGAGCGCTTCAACGAGGTACAGTGGCAGGCCAGTGGCGGCGTGGCGACCCTTGATGACGTAAAGGCCG TCAAAACCTCTGGTGCCAGTGGTATCATTATCGGTAAGGCGCTGCTAACCGGCGTGTTCAGTGCAAAGGAGGCAATTGCA TGCTGGCCAAACGTATAG
Upstream 100 bases:
>100_bases GCGCCAAAATCCTCAGGAATTTTCTGGCAATCACCCTGGCCGACCTGGGGCTTGATGACCATTTTCGAGCGCAATCACAT GCTGGCACCTTGGAGCAATC
Downstream 100 bases:
>100_bases TGCCTTGCCTGGATGTGAAAGACGGCAAAGTGGTTAAGGGCGTGCAATTTCGTAACCACGAGATTGTCGGCGATATAGTG CCGCTTGCTGCCCGCTACGC
Product: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Products: NA
Alternate protein names: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MIIPAIDLIDGQVVRLFQGDYAKKTEFSLDPKNQLLSYQQDGAALLHLVDLTGAKDPDKRQTKLIEEIAASLSTPLQVGG GIRSAADVDALLNAGVARVVIGSLAVKSPEVVLRLFDKYGGDAICLALDVNIDADGNKMVAVHGWQQGGGKSLESLVDTF MPAGLKHALVTDISRDGTMTGANTALYCELAERFNEVQWQASGGVATLDDVKAVKTSGASGIIIGKALLTGVFSAKEAIA CWPNV
Sequences:
>Translated_245_residues MIIPAIDLIDGQVVRLFQGDYAKKTEFSLDPKNQLLSYQQDGAALLHLVDLTGAKDPDKRQTKLIEEIAASLSTPLQVGG GIRSAADVDALLNAGVARVVIGSLAVKSPEVVLRLFDKYGGDAICLALDVNIDADGNKMVAVHGWQQGGGKSLESLVDTF MPAGLKHALVTDISRDGTMTGANTALYCELAERFNEVQWQASGGVATLDDVKAVKTSGASGIIIGKALLTGVFSAKEAIA CWPNV >Mature_245_residues MIIPAIDLIDGQVVRLFQGDYAKKTEFSLDPKNQLLSYQQDGAALLHLVDLTGAKDPDKRQTKLIEEIAASLSTPLQVGG GIRSAADVDALLNAGVARVVIGSLAVKSPEVVLRLFDKYGGDAICLALDVNIDADGNKMVAVHGWQQGGGKSLESLVDTF MPAGLKHALVTDISRDGTMTGANTALYCELAERFNEVQWQASGGVATLDDVKAVKTSGASGIIIGKALLTGVFSAKEAIA CWPNV
Specific function: Histidine biosynthesis; fourth step. [C]
COG id: COG0106
COG function: function code E; Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hisA/hisF family
Homologues:
Organism=Escherichia coli, GI87082028, Length=244, Percent_Identity=58.6065573770492, Blast_Score=295, Evalue=2e-81, Organism=Escherichia coli, GI1788336, Length=216, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HIS4_SHEAM (A1S6Z5)
Other databases:
- EMBL: CP000507 - RefSeq: YP_927821.1 - ProteinModelPortal: A1S6Z5 - STRING: A1S6Z5 - GeneID: 4604196 - GenomeReviews: CP000507_GR - KEGG: saz:Sama_1946 - NMPDR: fig|326297.7.peg.1828 - eggNOG: COG0106 - HOGENOM: HBG541613 - OMA: SIIYTDI - PhylomeDB: A1S6Z5 - ProtClustDB: PRK00748 - GO: GO:0005737 - HAMAP: MF_01014 - InterPro: IPR013785 - InterPro: IPR006062 - InterPro: IPR006063 - InterPro: IPR023016 - InterPro: IPR011060 - Gene3D: G3DSA:3.20.20.70 - TIGRFAMs: TIGR00007
Pfam domain/function: PF00977 His_biosynth; SSF51366 RibP_bind_barrel
EC number: =5.3.1.16
Molecular weight: Translated: 25764; Mature: 25764
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: ACT_SITE 7-7 ACT_SITE 129-129
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIPAIDLIDGQVVRLFQGDYAKKTEFSLDPKNQLLSYQQDGAALLHLVDLTGAKDPDKR CCCCCEECCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEECCCCCCCCHH QTKLIEEIAASLSTPLQVGGGIRSAADVDALLNAGVARVVIGSLAVKSPEVVLRLFDKYG HHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCC GDAICLALDVNIDADGNKMVAVHGWQQGGGKSLESLVDTFMPAGLKHALVTDISRDGTMT CCEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC GANTALYCELAERFNEVQWQASGGVATLDDVKAVKTSGASGIIIGKALLTGVFSAKEAIA CCCCEEEHHHHHHHHHEEEECCCCEEEHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHEE CWPNV CCCCC >Mature Secondary Structure MIIPAIDLIDGQVVRLFQGDYAKKTEFSLDPKNQLLSYQQDGAALLHLVDLTGAKDPDKR CCCCCEECCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEEECCCCCCCCHH QTKLIEEIAASLSTPLQVGGGIRSAADVDALLNAGVARVVIGSLAVKSPEVVLRLFDKYG HHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCC GDAICLALDVNIDADGNKMVAVHGWQQGGGKSLESLVDTFMPAGLKHALVTDISRDGTMT CCEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC GANTALYCELAERFNEVQWQASGGVATLDDVKAVKTSGASGIIIGKALLTGVFSAKEAIA CCCCEEEHHHHHHHHHEEEECCCCEEEHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHEE CWPNV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA