| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775021
Identifier: 119775021
GI number: 119775021
Start: 2302018
End: 2302545
Strand: Reverse
Name: 119775021
Synonym: Sama_1886
Alternate gene names: NA
Gene position: 2302545-2302018 (Counterclockwise)
Preceding gene: 119775022
Following gene: 119775018
Centisome position: 53.47
GC content: 55.11
Gene sequence:
>528_bases ATGAAACTGCCACTGCTGATGCTAAGTTTGCTGCTCGGCGCTGGTTGCGCCGAGGCGGTTGTAACGCCTGTGACGGAGGA TACCAACTTACGTCAACAGCAAAACGGATTTAAGGAAAACACCATGGACATGCCACTTATTGGAGCCCTGACAGTAGAAG GCACTGACAAACGTGGCAAACTTTTGGTTACGCTCACTGTCACTCACCAGGGCAGCAGTGTGATTACCGCGCACTTCACC TCAGGAATGGGCGCGGATCTCTGGCTTATGGATAAGGGGCATCGCAAGGTATGGGCCTGGTCGCAGGAAATGATGTTTAC TCAGGCATTGAGACAAACCCAAATCGCCCCCGGTGAGGTGCTGACGCATAAGTTTGCTGTGCCTCAACAAGCGCTGTCGA GCTGTCAGGGACCCTGCCAGTTTGAGGCAATCTTTGCTGGCACCACGGAGGGGCGAAGCCCATTGATGGCCCCTGTCAGC ATGAATGTATCCGGGTTGGCGGTGCCAGTCATCCCCCCTCGCAGCTGA
Upstream 100 bases:
>100_bases TGGATACCGAGGCTCTGCTCAAAGGCCAACTGAAGGGCGAGACTGATAAACTCAAAGATAAGTTGAAAGATTCCCTGTTC AAAAAGTTGGGAGGTAATCA
Downstream 100 bases:
>100_bases TAGCAGCGGCAGTACTCAGGAAAAAGTACGTTGGGGTGTAGGAAAAGGAGCGGCGTGGCCGCTCCTTTTTATTTCGGGTC TTGAGCTACGACAGCTATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGKLLVTLTVTHQGSSVITAHFT SGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEVLTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVS MNVSGLAVPVIPPRS
Sequences:
>Translated_175_residues MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGKLLVTLTVTHQGSSVITAHFT SGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEVLTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVS MNVSGLAVPVIPPRS >Mature_175_residues MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGKLLVTLTVTHQGSSVITAHFT SGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEVLTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVS MNVSGLAVPVIPPRS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18849; Mature: 18849
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 5.7 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGK CCCHHHHHHHHHCCCCCHHEEECCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCE LLVTLTVTHQGSSVITAHFTSGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEV EEEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCHH LTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVSMNVSGLAVPVIPPRS HHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCCCCC >Mature Secondary Structure MKLPLLMLSLLLGAGCAEAVVTPVTEDTNLRQQQNGFKENTMDMPLIGALTVEGTDKRGK CCCHHHHHHHHHCCCCCHHEEECCCCCCCCHHHHCCCCCCCCCCCEEEEEEECCCCCCCE LLVTLTVTHQGSSVITAHFTSGMGADLWLMDKGHRKVWAWSQEMMFTQALRQTQIAPGEV EEEEEEEEECCCEEEEEEECCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCCHH LTHKFAVPQQALSSCQGPCQFEAIFAGTTEGRSPLMAPVSMNVSGLAVPVIPPRS HHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA