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The map label for this gene is 119774962

Identifier: 119774962

GI number: 119774962

Start: 2223552

End: 2224169

Strand: Direct

Name: 119774962

Synonym: Sama_1827

Alternate gene names: NA

Gene position: 2223552-2224169 (Clockwise)

Preceding gene: 119774961

Following gene: 119774964

Centisome position: 51.64

GC content: 53.72

Gene sequence:

>618_bases
TTGAGTCCAACGCCACTCTCAAATCTATTGCCATCAATAGACAAGCAGCTGGTGATGGTTGGCGCGCTCTTGTCAGCGCT
GTGCGCCGCGCTCTATTTATTGCCCATTGATTCACAGCTTAACTGGCAACGAAGCCAAATTGGTGCAGGCGAATATTGGC
GCCTTATTAGCGGTAATCTGCTGCACACCAATCACTGGCACCTGCTGATGAACCTGGCAGGGTTCTGGGTGATTTTAAGC
CTGCATCATTTTCATTACCGTGCAACCGGGCTCCTGTTGCTGCTGTTTGCACTCTGTCTTGGTGAAGGGGTTGGCCTGTA
CCTATGTTACCCAAGCCTTCACGCTTATGTTGGCCTGAGCGGTATCTTGCACGGCCTCTTTGCCTTCGGCTCCCTGATGG
ATATCGAGCGCGGGCTTAGATCCGGCTGGCTGCTCCTGCTTGGTCTGGGGTTGAAAGTAGGATACGAGCAGTATTTTGGC
GCCAGCAGCGATGTGGCAAGCCTGATTGGTGCCAGAGTCGCCACCGAATCGCATCTGGTGGGCGCACTGGTTGGCACTGT
GCTGGGCGCAGCCTATCTGGCGGTGAGGAAATTGAAACAAGCTAAGGTTTATGGGTAA

Upstream 100 bases:

>100_bases
GAGACTGCCCTGCCTGTCACTTGCGTAAACGTGGCCTTGAGGACTACCTGAGTAATCGCGATGCAGTAAACGCTGAGCTA
ACCAAGAAGACAGGCGCCAA

Downstream 100 bases:

>100_bases
ATCGGGATGCCGCTTGTATCTAATACTGAAAACGCGCCACAAGGCGCGTTTTCCATTGTTGGACGTGCAGGCTGCTGCGT
CAGGGGTGACGGCAAGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Integral Membrane Protein; Rhomboid Protein; Rhomboid Family Membrane Protein; Rhomboid-Like Protein; Peptidase; Rhomboid Family Integral Membrane Protein

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSPTPLSNLLPSIDKQLVMVGALLSALCAALYLLPIDSQLNWQRSQIGAGEYWRLISGNLLHTNHWHLLMNLAGFWVILS
LHHFHYRATGLLLLLFALCLGEGVGLYLCYPSLHAYVGLSGILHGLFAFGSLMDIERGLRSGWLLLLGLGLKVGYEQYFG
ASSDVASLIGARVATESHLVGALVGTVLGAAYLAVRKLKQAKVYG

Sequences:

>Translated_205_residues
MSPTPLSNLLPSIDKQLVMVGALLSALCAALYLLPIDSQLNWQRSQIGAGEYWRLISGNLLHTNHWHLLMNLAGFWVILS
LHHFHYRATGLLLLLFALCLGEGVGLYLCYPSLHAYVGLSGILHGLFAFGSLMDIERGLRSGWLLLLGLGLKVGYEQYFG
ASSDVASLIGARVATESHLVGALVGTVLGAAYLAVRKLKQAKVYG
>Mature_204_residues
SPTPLSNLLPSIDKQLVMVGALLSALCAALYLLPIDSQLNWQRSQIGAGEYWRLISGNLLHTNHWHLLMNLAGFWVILSL
HHFHYRATGLLLLLFALCLGEGVGLYLCYPSLHAYVGLSGILHGLFAFGSLMDIERGLRSGWLLLLGLGLKVGYEQYFGA
SSDVASLIGARVATESHLVGALVGTVLGAAYLAVRKLKQAKVYG

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22216; Mature: 22084

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTPLSNLLPSIDKQLVMVGALLSALCAALYLLPIDSQLNWQRSQIGAGEYWRLISGNL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHCCCE
LHTNHWHLLMNLAGFWVILSLHHFHYRATGLLLLLFALCLGEGVGLYLCYPSLHAYVGLS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
GILHGLFAFGSLMDIERGLRSGWLLLLGLGLKVGYEQYFGASSDVASLIGARVATESHLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GALVGTVLGAAYLAVRKLKQAKVYG
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SPTPLSNLLPSIDKQLVMVGALLSALCAALYLLPIDSQLNWQRSQIGAGEYWRLISGNL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHCCCE
LHTNHWHLLMNLAGFWVILSLHHFHYRATGLLLLLFALCLGEGVGLYLCYPSLHAYVGLS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
GILHGLFAFGSLMDIERGLRSGWLLLLGLGLKVGYEQYFGASSDVASLIGARVATESHLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
GALVGTVLGAAYLAVRKLKQAKVYG
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA