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The map label for this gene is ygcF [H]

Identifier: 119774960

GI number: 119774960

Start: 2222001

End: 2222702

Strand: Reverse

Name: ygcF [H]

Synonym: Sama_1825

Alternate gene names: 119774960

Gene position: 2222702-2222001 (Counterclockwise)

Preceding gene: 119774963

Following gene: 119774958

Centisome position: 51.62

GC content: 52.85

Gene sequence:

>702_bases
ATGGCAACGACACCAACTGAGCGAGTCCTGATGACCGAGTATCCCATCAACGAAGTCTTTGAAACCATTCAGGGTGAAGG
CAGCCATACGGGTCTGCCCGCTATCTTCGTGCGCCTGCAGGGCTGCCCGGTAGCCTGTCCCTGGTGCGATACCGCCCAAA
CCTGGGATGTACTCGAGCAAAGTAAAGTGGCGCCAGCGGATGTCATTCAGGTGGACGGCAGCATAGGCCGCTGGGCTATG
CATTCTGCCTCATCTTTGGTTGCTGCATTTAATCAAAAGGGCTTTACCGCCAAATTGGTTGTGATCACCGGCGGCGAGCC
CTGTATGCACGATTTAACCGATTTGACCCAAGGCTTTGAAGCAGAGGGATTTCATTGCCAGATAGAAACAAGCGGGACCT
TTGAGGTGCACTGCTCCGACCGCACCTATGTGACTGTATCGCCCAAGATCAATATGAAAGGTGGCTACCCGGTGCTGAAA
CAGGCCCTCGTTCGCGCCAATGAAATCAAACATCCGGTGGCCACAGATGCGCATATCGATGAGCTCGATGCGCTGCTCGA
AGGCATAGATACCAGCGGCAAAACCATTTGTTTGCAGCCTATCAGCCAAAAGCCCCGCGCCACCGAGCTTGCCATGAAAA
CCTGCATTGCACGTAATTGGCGTCTGTCTATTCAAACCCACAAGTATTTGAATATCGATTAA

Upstream 100 bases:

>100_bases
ATCAAAGTAGCTGGTTTCCGGCGCGTGAAAGTTCCCTTGAATCTGCGGCTGAAATCTTCTATAACAGCCGGCCGAATTGA
ATGTCAGTCGTTGCCCAGCC

Downstream 100 bases:

>100_bases
TTTGGTAAATCGCTCATTTCGGTCGTGCCAATAAAAAAGCTCCCGAGGGAGCTTTTTTATTGGGGCATCAGGAACTCACA
GCTTGCCACTTTCACTGAAG

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MATTPTERVLMTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPVACPWCDTAQTWDVLEQSKVAPADVIQVDGSIGRWAM
HSASSLVAAFNQKGFTAKLVVITGGEPCMHDLTDLTQGFEAEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLK
QALVRANEIKHPVATDAHIDELDALLEGIDTSGKTICLQPISQKPRATELAMKTCIARNWRLSIQTHKYLNID

Sequences:

>Translated_233_residues
MATTPTERVLMTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPVACPWCDTAQTWDVLEQSKVAPADVIQVDGSIGRWAM
HSASSLVAAFNQKGFTAKLVVITGGEPCMHDLTDLTQGFEAEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLK
QALVRANEIKHPVATDAHIDELDALLEGIDTSGKTICLQPISQKPRATELAMKTCIARNWRLSIQTHKYLNID
>Mature_232_residues
ATTPTERVLMTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPVACPWCDTAQTWDVLEQSKVAPADVIQVDGSIGRWAMH
SASSLVAAFNQKGFTAKLVVITGGEPCMHDLTDLTQGFEAEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLKQ
ALVRANEIKHPVATDAHIDELDALLEGIDTSGKTICLQPISQKPRATELAMKTCIARNWRLSIQTHKYLNID

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=221, Percent_Identity=58.8235294117647, Blast_Score=271, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25543; Mature: 25412

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATTPTERVLMTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPVACPWCDTAQTWDVLEQ
CCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHHH
SKVAPADVIQVDGSIGRWAMHSASSLVAAFNQKGFTAKLVVITGGEPCMHDLTDLTQGFE
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCC
AEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLKQALVRANEIKHPVATDAHID
CCCEEEEEECCCEEEEEECCCEEEEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHH
ELDALLEGIDTSGKTICLQPISQKPRATELAMKTCIARNWRLSIQTHKYLNID
HHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC
>Mature Secondary Structure 
ATTPTERVLMTEYPINEVFETIQGEGSHTGLPAIFVRLQGCPVACPWCDTAQTWDVLEQ
CCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCEEEEEECCCCEECCCCCCCHHHHHHHH
SKVAPADVIQVDGSIGRWAMHSASSLVAAFNQKGFTAKLVVITGGEPCMHDLTDLTQGFE
CCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCC
AEGFHCQIETSGTFEVHCSDRTYVTVSPKINMKGGYPVLKQALVRANEIKHPVATDAHID
CCCEEEEEECCCEEEEEECCCEEEEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHH
ELDALLEGIDTSGKTICLQPISQKPRATELAMKTCIARNWRLSIQTHKYLNID
HHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]