| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774954
Identifier: 119774954
GI number: 119774954
Start: 2215956
End: 2216519
Strand: Direct
Name: 119774954
Synonym: Sama_1819
Alternate gene names: NA
Gene position: 2215956-2216519 (Clockwise)
Preceding gene: 119774952
Following gene: 119774955
Centisome position: 51.46
GC content: 48.4
Gene sequence:
>564_bases ATGAGAATTTTTCCGATATTGTTGAGCCTGATGCTCTCGTTTGCTGTTTTGGCAAACAACGCCCCGCAAACGAAAGATGA CATTGCCATCAATAAAACCTATGACCTCTTTTCTGAGGCCTTCGACAAGCTGAATGCTGCCCTGATAGGCGAGGCATACA CCGAGAGTGCCTGCTATATACCCGAGCGTCACGATAAAGAAATTATTCGCGGACGCGATGCCATTGTGTCTGTTTATGAA AAGTTTTTCGGCAAAATCCGCAGTAAAAATGCCCGTATCGAAGTGGATTTCCGGGTGATAGACCGCAGTCGCGCAGGCGA TTCAGTGACGGATGTTGGTTATTACCTTATTCGATTCCATCCGGCCAGCGACACCGGTGAACCCGTCAGTGAATACGCAG GCAAATTTGTCACTGTCTCCAGAAAGCAAGCCGATGGCAATTGGCTCCTGTCCATCGATTCCAGCAACCGCTCAGAGCCC AGGTTTTATTACCAGACACAGCCTGTGGGTGAACTCTATTTCGGACAAAGGTTCATCTCACCCGATGTTGCCAAAAAACC CTAA
Upstream 100 bases:
>100_bases CTAACGCTGGAAGTAACACACTTTGTAAAGATATGCCGCTTGGGTTGCGGCCTCTCATACATTATATTTGGCCCATAATA GCGTTATTTAAGTAAAACAG
Downstream 100 bases:
>100_bases CCTCTGATCTGACAGCTGAGTAGTAAGATTATGTCCACTCCCTGCCCTTGCGGCCTCGCAAGCTATCACAGCTGCTGCGA GCCCTTCCACTCTGGCAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 187; Mature: 187
Protein sequence:
>187_residues MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYIPERHDKEIIRGRDAIVSVYE KFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFHPASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEP RFYYQTQPVGELYFGQRFISPDVAKKP
Sequences:
>Translated_187_residues MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYIPERHDKEIIRGRDAIVSVYE KFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFHPASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEP RFYYQTQPVGELYFGQRFISPDVAKKP >Mature_187_residues MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYIPERHDKEIIRGRDAIVSVYE KFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFHPASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEP RFYYQTQPVGELYFGQRFISPDVAKKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21237; Mature: 21237
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYI CCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCC PERHDKEIIRGRDAIVSVYEKFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFH CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHCEEEEEEEE PASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEPRFYYQTQPVGELYFGQRFIS CCCCCCCCHHHHCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCCHHHHCCEECC PDVAKKP CCCCCCC >Mature Secondary Structure MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYI CCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCC PERHDKEIIRGRDAIVSVYEKFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFH CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHCEEEEEEEE PASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEPRFYYQTQPVGELYFGQRFIS CCCCCCCCHHHHCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCCHHHHCCEECC PDVAKKP CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA