| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774942
Identifier: 119774942
GI number: 119774942
Start: 2199962
End: 2200831
Strand: Direct
Name: 119774942
Synonym: Sama_1807
Alternate gene names: NA
Gene position: 2199962-2200831 (Clockwise)
Preceding gene: 119774939
Following gene: 119774943
Centisome position: 51.09
GC content: 50.11
Gene sequence:
>870_bases ATGTTTACATCATTTGCATTTGTCACCGGTGCTTTTGTGCTTTTTGGCTGTGATAATGGCCGAAACTCAGACACGATCTG TAAAAATAATCCTGAACTTTGCGAAGACCTGCATAAAGACAGTTGGTGCCGATATGAGAAAGGGGACCTTATCCGCCAGC GTTTCATCCTGAAAACTACCCCCAACCCCACAGGTAAACAAATTTACGACCAGCTCAGATTTCTCGAGGTGTATTCAAAA TGCATTGAGTTGGCTTCAGGGGTACAACACAAGGTTAACGTTCAGCGCACCAATGACAGACTACGCGCCTTTGGTATAAG TGTGCAGAACCTGGAAGAATTACAGGAATCCACCAAGGGCAGCCAAGATCCTTACCTCGCCTACTACCACTGGTCCCGAC TCGACGACGCGAAAAGTCTTGCCGTGCTCATCAAAGCCGAAAAGGAAGGACAGATTTCTGATCCGGAGCTTTTATCCAAG CTGGCGATTTACTACCTGAAGACTGACGCCGCCCGAGCCAAAAAACTGTACCTTGATGTGCTGGGCATGGTCGATGCAGA CCATCTTGATCCGGACTGGTTACTTGGGCTTGCCACAGCCTCACGCACTCTCGGCGATTTAGACGGCAGTTACCTTTACT CCAGGGCCAACATAGCGCTGACCAAGCAAAGCGTTAATGAGGCGCAAATGCTGGCGCTGCTGACGGGCGATAAGACCAAG GCGGCCATGCTTGATAGCGAAGCAGAACAGTTGGCCAAAGCGGTCAGTTCCGGAAATTTTGCCGGTAGTGCGATTGAGAA ACGCCTGAGGGCCGAGATAGATACAGAACGGGCAAAAATCGAGCCAGTCGCTCCTTTAGCACAGGATTGA
Upstream 100 bases:
>100_bases TGAAACTTCCACCGCCTTGCCAGAAAGATATTTTCGCTAAGTTTGTAATTTTATTAGAGAAAACACAGTGAAAAGTCATA GACAACGACCTTTTTTTGTA
Downstream 100 bases:
>100_bases CTGCCCTGATTTTTCAAAAAGCGAGACCGATGTAAAAATATAACGATTCTTGAGGTGAAAAACGGGTTAAAACTGGGATT TAACTTGACGAAATCGAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTTPNPTGKQIYDQLRFLEVYSK CIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKGSQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSK LAIYYLKTDAARAKKLYLDVLGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD
Sequences:
>Translated_289_residues MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTTPNPTGKQIYDQLRFLEVYSK CIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKGSQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSK LAIYYLKTDAARAKKLYLDVLGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD >Mature_289_residues MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTTPNPTGKQIYDQLRFLEVYSK CIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKGSQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSK LAIYYLKTDAARAKKLYLDVLGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32239; Mature: 32239
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTT CCCCHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHEEEECC PNPTGKQIYDQLRFLEVYSKCIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKG CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEHHCCHHHHHCCCHHHHHHHHHHCCC SQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSKLAIYYLKTDAARAKKLYLDV CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH LGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK HHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEECCCEEEEHHHCCHHHEEEEEECCCHH AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCCCC >Mature Secondary Structure MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTT CCCCHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHEEEECC PNPTGKQIYDQLRFLEVYSKCIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKG CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEHHCCHHHHHCCCHHHHHHHHHHCCC SQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSKLAIYYLKTDAARAKKLYLDV CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH LGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK HHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEECCCEEEEHHHCCHHHEEEEEECCCHH AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA