Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774942

Identifier: 119774942

GI number: 119774942

Start: 2199962

End: 2200831

Strand: Direct

Name: 119774942

Synonym: Sama_1807

Alternate gene names: NA

Gene position: 2199962-2200831 (Clockwise)

Preceding gene: 119774939

Following gene: 119774943

Centisome position: 51.09

GC content: 50.11

Gene sequence:

>870_bases
ATGTTTACATCATTTGCATTTGTCACCGGTGCTTTTGTGCTTTTTGGCTGTGATAATGGCCGAAACTCAGACACGATCTG
TAAAAATAATCCTGAACTTTGCGAAGACCTGCATAAAGACAGTTGGTGCCGATATGAGAAAGGGGACCTTATCCGCCAGC
GTTTCATCCTGAAAACTACCCCCAACCCCACAGGTAAACAAATTTACGACCAGCTCAGATTTCTCGAGGTGTATTCAAAA
TGCATTGAGTTGGCTTCAGGGGTACAACACAAGGTTAACGTTCAGCGCACCAATGACAGACTACGCGCCTTTGGTATAAG
TGTGCAGAACCTGGAAGAATTACAGGAATCCACCAAGGGCAGCCAAGATCCTTACCTCGCCTACTACCACTGGTCCCGAC
TCGACGACGCGAAAAGTCTTGCCGTGCTCATCAAAGCCGAAAAGGAAGGACAGATTTCTGATCCGGAGCTTTTATCCAAG
CTGGCGATTTACTACCTGAAGACTGACGCCGCCCGAGCCAAAAAACTGTACCTTGATGTGCTGGGCATGGTCGATGCAGA
CCATCTTGATCCGGACTGGTTACTTGGGCTTGCCACAGCCTCACGCACTCTCGGCGATTTAGACGGCAGTTACCTTTACT
CCAGGGCCAACATAGCGCTGACCAAGCAAAGCGTTAATGAGGCGCAAATGCTGGCGCTGCTGACGGGCGATAAGACCAAG
GCGGCCATGCTTGATAGCGAAGCAGAACAGTTGGCCAAAGCGGTCAGTTCCGGAAATTTTGCCGGTAGTGCGATTGAGAA
ACGCCTGAGGGCCGAGATAGATACAGAACGGGCAAAAATCGAGCCAGTCGCTCCTTTAGCACAGGATTGA

Upstream 100 bases:

>100_bases
TGAAACTTCCACCGCCTTGCCAGAAAGATATTTTCGCTAAGTTTGTAATTTTATTAGAGAAAACACAGTGAAAAGTCATA
GACAACGACCTTTTTTTGTA

Downstream 100 bases:

>100_bases
CTGCCCTGATTTTTCAAAAAGCGAGACCGATGTAAAAATATAACGATTCTTGAGGTGAAAAACGGGTTAAAACTGGGATT
TAACTTGACGAAATCGAACA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTTPNPTGKQIYDQLRFLEVYSK
CIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKGSQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSK
LAIYYLKTDAARAKKLYLDVLGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK
AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD

Sequences:

>Translated_289_residues
MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTTPNPTGKQIYDQLRFLEVYSK
CIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKGSQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSK
LAIYYLKTDAARAKKLYLDVLGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK
AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD
>Mature_289_residues
MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTTPNPTGKQIYDQLRFLEVYSK
CIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKGSQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSK
LAIYYLKTDAARAKKLYLDVLGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK
AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32239; Mature: 32239

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTT
CCCCHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHEEEECC
PNPTGKQIYDQLRFLEVYSKCIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEHHCCHHHHHCCCHHHHHHHHHHCCC
SQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSKLAIYYLKTDAARAKKLYLDV
CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
LGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEECCCEEEEHHHCCHHHEEEEEECCCHH
AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFTSFAFVTGAFVLFGCDNGRNSDTICKNNPELCEDLHKDSWCRYEKGDLIRQRFILKTT
CCCCHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHEEEECC
PNPTGKQIYDQLRFLEVYSKCIELASGVQHKVNVQRTNDRLRAFGISVQNLEELQESTKG
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEHHCCHHHHHCCCHHHHHHHHHHCCC
SQDPYLAYYHWSRLDDAKSLAVLIKAEKEGQISDPELLSKLAIYYLKTDAARAKKLYLDV
CCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
LGMVDADHLDPDWLLGLATASRTLGDLDGSYLYSRANIALTKQSVNEAQMLALLTGDKTK
HHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEECCCEEEEHHHCCHHHEEEEEECCCHH
AAMLDSEAEQLAKAVSSGNFAGSAIEKRLRAEIDTERAKIEPVAPLAQD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA