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The map label for this gene is ctaD [H]

Identifier: 119774926

GI number: 119774926

Start: 2183928

End: 2185364

Strand: Direct

Name: ctaD [H]

Synonym: Sama_1791

Alternate gene names: 119774926

Gene position: 2183928-2185364 (Clockwise)

Preceding gene: 119774924

Following gene: 119774927

Centisome position: 50.72

GC content: 53.1

Gene sequence:

>1437_bases
ATGATGAACCATTCCCAGCCACACGGCGCTGATTACAATTACACTGTCGTGCGCCAATTCGCTTTAACCACAGTTCTGTG
GGGCATTGTTGGTATGTCCGTCGGTGTACTGATTGCGGCTCAGTTAATCTGGCCCCAGCTGAACTTCGATACCCCTTGGT
TAACCTACAGCCGCTTGCGGCCATTACACACCAATGCGGTGATCTTCGCGTTCGGTACCTCAGCGCTTTTCGCCACCTCC
TATTATGTTGTTCAACGTACTTGTCAAACCCGTCTGTTTGCGCCAGCTTTGGCGTCATTCACCTTCTGGGGTTGGCAAGC
TATCATTCTGGCTGCCGCCATCACTCTGCCACTGGGTATTACCAGCGGCAAAGAATATGCCGAGCTGGAATGGCCAATCG
ACATCGCTATCGCCGTTGTATGGGTCAGCTATGCGATTGTGTTCTTCGGTACTATCGTAAAGCGCAAGACTTCCCACATT
TATGTGGCGAACTGGTTCTTCGGTGCCTTCATCATCACGGTAGCTGTTCTGCACATCGTAAACTCCATGGCTGTGCCTGT
TAGCCTGTGGAAGTCTTACTCCATTTATGCCGGTGCGGTAGATGCTATGGTGCAGTGGTGGTATGGCCACAACGCCGTAG
GCTTCCTGCTGACCGCTGGCTTCCTGGGTATGATGTACTACTTCGTGCCTAAGCAAGCGGGTCGTCCAGTTTACTCTTAC
CGTCTGTCCATCGTGCACTTCTGGGCACTGATCGCACTGTACATCTGGGCCGGTCCTCACCACCTGCACTACACTGCCCT
GCCCGACTGGACTCAGTCTCTGGGTATGGTGATGTCACTGATCCTGTTCGCACCTTCATGGGGCGGTATGATCAACGGTA
TCATGACCCTGTCAGGCGCCTGGCACAAACTGCGCACTGATCCAGTGCTGCGCTTCCTGGTGGTATCTCTGTCCTTCTAC
GGTATGTCTACCTTCGAAGGTCCTATGATGGCCATCAAGACAGTAAACGCGCTGTCTCACTACACTGACTGGACCGTGGG
TCACGTACACTCTGGTGCCCTGGGTTGGGTAGCCATGGTGTCTATCGGTTCTCTGTATCACCTGATCCCTAACCTGTTCG
GTCATGGCCGCATGTACTCTACCTCTTTGGTAAACGTACACTTCTGGCTGGCCACTATCGGCACCGTGCTGTACATCGTT
GCCATGTGGATCTCCGGTGTAATGCAGGGTTTGATGTGGCGTGCAGTGAACTCGGACGGCACCCTGACCTACAGCTTCGT
AGAAAGTCTGGAAGCCTCTTATCCGTTCTACTTCGTACGTTTCCTGGGCGGCTGCTTCTTCGTAACCGGTATGCTGATCA
TGGCTTACAACGTATTCCGCACTGTGAAGGCACCTAAAGATTCACTGCCTGCACTGTCTGAAGCCAAAGCTGCATAA

Upstream 100 bases:

>100_bases
TACAGCCCGATAGGGAACGCGCTGAATGTCATTTAAAAAAAACCGGTAGAGCTCGTCTTTACTCACATTACAAGTAAAAG
TAATAAGCAGTGGAAGCACT

Downstream 100 bases:

>100_bases
GGAGTAGACACGATGAAATTCAACCATGAATTAATTGAGAAAAACATCGGTTTGCTCGGTATCTTCACCGTGCTGGTGAT
CAGCATCGGTGGTCTGGTGC

Product: cbb3-type cytochrome c oxidase subunit I

Products: NA

Alternate protein names: Cytochrome BB(3) subunit 1; Cytochrome c oxidase polypeptide I [H]

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MMNHSQPHGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFATS
YYVVQRTCQTRLFAPALASFTFWGWQAIILAAAITLPLGITSGKEYAELEWPIDIAIAVVWVSYAIVFFGTIVKRKTSHI
YVANWFFGAFIITVAVLHIVNSMAVPVSLWKSYSIYAGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
RLSIVHFWALIALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGAWHKLRTDPVLRFLVVSLSFY
GMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSLYHLIPNLFGHGRMYSTSLVNVHFWLATIGTVLYIV
AMWISGVMQGLMWRAVNSDGTLTYSFVESLEASYPFYFVRFLGGCFFVTGMLIMAYNVFRTVKAPKDSLPALSEAKAA

Sequences:

>Translated_478_residues
MMNHSQPHGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFATS
YYVVQRTCQTRLFAPALASFTFWGWQAIILAAAITLPLGITSGKEYAELEWPIDIAIAVVWVSYAIVFFGTIVKRKTSHI
YVANWFFGAFIITVAVLHIVNSMAVPVSLWKSYSIYAGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
RLSIVHFWALIALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGAWHKLRTDPVLRFLVVSLSFY
GMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSLYHLIPNLFGHGRMYSTSLVNVHFWLATIGTVLYIV
AMWISGVMQGLMWRAVNSDGTLTYSFVESLEASYPFYFVRFLGGCFFVTGMLIMAYNVFRTVKAPKDSLPALSEAKAA
>Mature_478_residues
MMNHSQPHGADYNYTVVRQFALTTVLWGIVGMSVGVLIAAQLIWPQLNFDTPWLTYSRLRPLHTNAVIFAFGTSALFATS
YYVVQRTCQTRLFAPALASFTFWGWQAIILAAAITLPLGITSGKEYAELEWPIDIAIAVVWVSYAIVFFGTIVKRKTSHI
YVANWFFGAFIITVAVLHIVNSMAVPVSLWKSYSIYAGAVDAMVQWWYGHNAVGFLLTAGFLGMMYYFVPKQAGRPVYSY
RLSIVHFWALIALYIWAGPHHLHYTALPDWTQSLGMVMSLILFAPSWGGMINGIMTLSGAWHKLRTDPVLRFLVVSLSFY
GMSTFEGPMMAIKTVNALSHYTDWTVGHVHSGALGWVAMVSIGSLYHLIPNLFGHGRMYSTSLVNVHFWLATIGTVLYIV
AMWISGVMQGLMWRAVNSDGTLTYSFVESLEASYPFYFVRFLGGCFFVTGMLIMAYNVFRTVKAPKDSLPALSEAKAA

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. Co I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG3278

COG function: function code O; Cbb3-type cytochrome oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004677
- InterPro:   IPR000883 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 53402; Mature: 53402

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCC
>Mature Secondary Structure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CEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7891558 [H]