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The map label for this gene is rpfG [H]

Identifier: 119774924

GI number: 119774924

Start: 2181634

End: 2183208

Strand: Direct

Name: rpfG [H]

Synonym: Sama_1789

Alternate gene names: 119774924

Gene position: 2181634-2183208 (Clockwise)

Preceding gene: 119774922

Following gene: 119774926

Centisome position: 50.66

GC content: 49.59

Gene sequence:

>1575_bases
ATGCTCATTGATATGGCAAAGAAAAGTCCCTTGTTTTCGGGCAAAAAAAAGGTTGAATCAGAGGATTCGGGTCCAGCATG
GAAGATCCTGGTTGTCGACGATGAGCCCGATGTCCACACAGTGACCAAACTCGCCCTGTCCAGATTCAAATTGGAAGGCC
GCTCTCTGGCTTTCATCAACGCTTACAGCGGGGAGCAAGCCAAAGAAATTCTCAACAACGAAACCGACGTGGCCGTAGCC
TTTATCGATGTAGTGATGGAAAGCGACCACGCTGGCCTGGAGTTGGTACGCTGGATACGTGAAGAACTTAAAAACCGAAC
CATGAGAATAGTACTGAGGACTGGCCAACCCGGTCAGGCCCCTGAAGAAGACGTTATTGTCAATTACGACATTAATGACT
ACAAAGCCAAGGCCGAACTTGACTCTCGCAAACTCGTGACCAGTGTTTACTCTTCCCTGCGCTCCTACCGCGACATTATG
GAAATCGAACAGTCACGTCAGGTTCAGTTCAAGCACCGTAAAGGACTTGAGCGGGTGCTGGAAGCCACTTCAGGTTTGTT
CGAACTCAGAACCTTACACAAGTTTGCCGACGGGTTACTGACCCAGGTGGCAAGCCTGTTGAATCTTGACACTGAAACCT
TGCTTCTTTCCTGTAATGCCATGGATGCCATCAGTGGAAAAATCGGTGCCCACGACCTTGAAATCCTCGCTGGCACAGGG
CAATTTGCCGCCCACCATGACCGAGCCCTCGCACCCAATATTCTGGCACTACTGAAAGAAGCGCTTTCACAGAAACGATG
CCTCTATGAACAGAACTGCTTCGTCGGATACTTCCCCACCAAGAGTGGGTTAATCAATCTGCTGTATATGGACGGTATCG
ACAGAATAAGTGACCTTGACAAGCAGCTTATTGATATTTTTGCAATAAATGTTGGTGTGGCTTTTGAGAACCTACTGTTG
AACCAGGAGGTAGAAGACACTCAATCAGAACTCATTTTACGTTTGGGTGACGTTGTAGAAAGCCGCTCGAAGGAAGCGGC
GAACCACGTCAAACGCATGGCCGCCTACTGCCATGAGCTGGCTCTGCTGGCAGGGCTTGCAGATCATGAAGCTGATTTAT
TGAAACGAGCCGCGCCAATGCACGATATTGGCAAGATAGCCATTCCAGATGCTGTGCTTTTGAAACCCGGCAAGCTGGAC
AATGACGAGTGGCAAATCATGCGGCAGCACCCGGTGATCGGGCATCAAATTTTGGCGAATTCAGAGCGGCCTATTCTCAA
TGCTGCCGCGACTATCTCGTTGCAGCATCACGAAAAATTTGACGGCAGTGGTTATCCTGGAGGCCTCAGAGGAGATGATA
TTCATATTTACGCACGCATAGTGGCCATTGCTGACGTGTTTGATGCCCTGTCCCATGCCCGCTGCTACAAAGAAGCCTGG
CCACTGGACAAGGTTTTGGAGGAAATGAAAAATTGCTCAGGAACCCACTTCGATCCTGTATTGCTGCAACTCTTTATCGA
TAACGTTCAGACCTTCGTTGCCATCAAAGAGTGCTGGAGAGACAGCGGCGAGTGA

Upstream 100 bases:

>100_bases
TTTTGCCTCTCTGTTAAAGGAAAAAATCCACTTACATGAAATACTTGATCTACACTCAAATGGAACAAACCTACCCGCGT
TTTTAGCTTGAGGCCTGCGA

Downstream 100 bases:

>100_bases
TATCAGTCGTTATCGGCGAGAAAATCAAACCAAATCTGCTGTGACTGGCCGGCCTCGTTTGACACACTAAGCCAAAGTCG
CCACACCATATAGTCACTGG

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MLIDMAKKSPLFSGKKKVESEDSGPAWKILVVDDEPDVHTVTKLALSRFKLEGRSLAFINAYSGEQAKEILNNETDVAVA
FIDVVMESDHAGLELVRWIREELKNRTMRIVLRTGQPGQAPEEDVIVNYDINDYKAKAELDSRKLVTSVYSSLRSYRDIM
EIEQSRQVQFKHRKGLERVLEATSGLFELRTLHKFADGLLTQVASLLNLDTETLLLSCNAMDAISGKIGAHDLEILAGTG
QFAAHHDRALAPNILALLKEALSQKRCLYEQNCFVGYFPTKSGLINLLYMDGIDRISDLDKQLIDIFAINVGVAFENLLL
NQEVEDTQSELILRLGDVVESRSKEAANHVKRMAAYCHELALLAGLADHEADLLKRAAPMHDIGKIAIPDAVLLKPGKLD
NDEWQIMRQHPVIGHQILANSERPILNAAATISLQHHEKFDGSGYPGGLRGDDIHIYARIVAIADVFDALSHARCYKEAW
PLDKVLEEMKNCSGTHFDPVLLQLFIDNVQTFVAIKECWRDSGE

Sequences:

>Translated_524_residues
MLIDMAKKSPLFSGKKKVESEDSGPAWKILVVDDEPDVHTVTKLALSRFKLEGRSLAFINAYSGEQAKEILNNETDVAVA
FIDVVMESDHAGLELVRWIREELKNRTMRIVLRTGQPGQAPEEDVIVNYDINDYKAKAELDSRKLVTSVYSSLRSYRDIM
EIEQSRQVQFKHRKGLERVLEATSGLFELRTLHKFADGLLTQVASLLNLDTETLLLSCNAMDAISGKIGAHDLEILAGTG
QFAAHHDRALAPNILALLKEALSQKRCLYEQNCFVGYFPTKSGLINLLYMDGIDRISDLDKQLIDIFAINVGVAFENLLL
NQEVEDTQSELILRLGDVVESRSKEAANHVKRMAAYCHELALLAGLADHEADLLKRAAPMHDIGKIAIPDAVLLKPGKLD
NDEWQIMRQHPVIGHQILANSERPILNAAATISLQHHEKFDGSGYPGGLRGDDIHIYARIVAIADVFDALSHARCYKEAW
PLDKVLEEMKNCSGTHFDPVLLQLFIDNVQTFVAIKECWRDSGE
>Mature_524_residues
MLIDMAKKSPLFSGKKKVESEDSGPAWKILVVDDEPDVHTVTKLALSRFKLEGRSLAFINAYSGEQAKEILNNETDVAVA
FIDVVMESDHAGLELVRWIREELKNRTMRIVLRTGQPGQAPEEDVIVNYDINDYKAKAELDSRKLVTSVYSSLRSYRDIM
EIEQSRQVQFKHRKGLERVLEATSGLFELRTLHKFADGLLTQVASLLNLDTETLLLSCNAMDAISGKIGAHDLEILAGTG
QFAAHHDRALAPNILALLKEALSQKRCLYEQNCFVGYFPTKSGLINLLYMDGIDRISDLDKQLIDIFAINVGVAFENLLL
NQEVEDTQSELILRLGDVVESRSKEAANHVKRMAAYCHELALLAGLADHEADLLKRAAPMHDIGKIAIPDAVLLKPGKLD
NDEWQIMRQHPVIGHQILANSERPILNAAATISLQHHEKFDGSGYPGGLRGDDIHIYARIVAIADVFDALSHARCYKEAW
PLDKVLEEMKNCSGTHFDPVLLQLFIDNVQTFVAIKECWRDSGE

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 58585; Mature: 58585

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIDMAKKSPLFSGKKKVESEDSGPAWKILVVDDEPDVHTVTKLALSRFKLEGRSLAFIN
CCCCCCCCCCCCCCCHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
AYSGEQAKEILNNETDVAVAFIDVVMESDHAGLELVRWIREELKNRTMRIVLRTGQPGQA
CCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
PEEDVIVNYDINDYKAKAELDSRKLVTSVYSSLRSYRDIMEIEQSRQVQFKHRKGLERVL
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EATSGLFELRTLHKFADGLLTQVASLLNLDTETLLLSCNAMDAISGKIGAHDLEILAGTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCHHHHCCCCCCCCEEEEECCC
QFAAHHDRALAPNILALLKEALSQKRCLYEQNCFVGYFPTKSGLINLLYMDGIDRISDLD
CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCHHHHHHHH
KQLIDIFAINVGVAFENLLLNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAAYCHEL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAGLADHEADLLKRAAPMHDIGKIAIPDAVLLKPGKLDNDEWQIMRQHPVIGHQILAN
HHHHHCCCHHHHHHHHHCCHHHCCCEECCCEEEECCCCCCCHHHHHHHHCCCHHHHHHCC
SERPILNAAATISLQHHEKFDGSGYPGGLRGDDIHIYARIVAIADVFDALSHARCYKEAW
CCCCCEEHHEEEEEHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
PLDKVLEEMKNCSGTHFDPVLLQLFIDNVQTFVAIKECWRDSGE
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLIDMAKKSPLFSGKKKVESEDSGPAWKILVVDDEPDVHTVTKLALSRFKLEGRSLAFIN
CCCCCCCCCCCCCCCHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE
AYSGEQAKEILNNETDVAVAFIDVVMESDHAGLELVRWIREELKNRTMRIVLRTGQPGQA
CCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
PEEDVIVNYDINDYKAKAELDSRKLVTSVYSSLRSYRDIMEIEQSRQVQFKHRKGLERVL
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EATSGLFELRTLHKFADGLLTQVASLLNLDTETLLLSCNAMDAISGKIGAHDLEILAGTG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCCHHHHCCCCCCCCEEEEECCC
QFAAHHDRALAPNILALLKEALSQKRCLYEQNCFVGYFPTKSGLINLLYMDGIDRISDLD
CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCHHHHHHHH
KQLIDIFAINVGVAFENLLLNQEVEDTQSELILRLGDVVESRSKEAANHVKRMAAYCHEL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAGLADHEADLLKRAAPMHDIGKIAIPDAVLLKPGKLDNDEWQIMRQHPVIGHQILAN
HHHHHCCCHHHHHHHHHCCHHHCCCEECCCEEEECCCCCCCHHHHHHHHCCCHHHHHHCC
SERPILNAAATISLQHHEKFDGSGYPGGLRGDDIHIYARIVAIADVFDALSHARCYKEAW
CCCCCEEHHEEEEEHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
PLDKVLEEMKNCSGTHFDPVLLQLFIDNVQTFVAIKECWRDSGE
CHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]