| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774885
Identifier: 119774885
GI number: 119774885
Start: 2141242
End: 2141571
Strand: Direct
Name: 119774885
Synonym: Sama_1750
Alternate gene names: NA
Gene position: 2141242-2141571 (Clockwise)
Preceding gene: 119774883
Following gene: 119774890
Centisome position: 49.73
GC content: 52.42
Gene sequence:
>330_bases ATGGAAGACTCGACCGTAATGTTGCAAATTCACCACCGTCTCGAACCAGGCTGCCTTGGCCCTGATGGCGTGAACCATGT GGAGGCCTTTTGTGGTTTGGCACAAAAGGCGATGCAGCAATTGTCACCGGGGATATGCCGCTGGCAATTGGAGCCCCGTT ATGACAAGCGTCTTGCCGAAATGAGTTATTTCCTGGGGGCCAAACAACTCACCCGCGAACAGGCAGGCAAGTATTTGCAA CTCTTTGGCGAGGATATCGAGTCTTTTGAAGAACGGTTTCACGACAGGCTCACTCAACTCATCCATCAATATCTCGCGCG CAAGCCCTGA
Upstream 100 bases:
>100_bases TGTTAAATGACGTTTGTGTGTATTAAGTATGACAATTGAATGAAAGAGGGGCTCTCGTTGAGCCTATACTCTTGTTATCA CAATAGGTAAGGATGAACCT
Downstream 100 bases:
>100_bases GGTCCGGATAAATCGCATCTTTATTTGCCACAGACACTCCGGGTTGGAGCTTATACAGGCGGTGGCCTGTCATCCGGATG TGCGGCCTGCCGTACCGGGT
Product: putative orphan protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 109; Mature: 109
Protein sequence:
>109_residues MEDSTVMLQIHHRLEPGCLGPDGVNHVEAFCGLAQKAMQQLSPGICRWQLEPRYDKRLAEMSYFLGAKQLTREQAGKYLQ LFGEDIESFEERFHDRLTQLIHQYLARKP
Sequences:
>Translated_109_residues MEDSTVMLQIHHRLEPGCLGPDGVNHVEAFCGLAQKAMQQLSPGICRWQLEPRYDKRLAEMSYFLGAKQLTREQAGKYLQ LFGEDIESFEERFHDRLTQLIHQYLARKP >Mature_109_residues MEDSTVMLQIHHRLEPGCLGPDGVNHVEAFCGLAQKAMQQLSPGICRWQLEPRYDKRLAEMSYFLGAKQLTREQAGKYLQ LFGEDIESFEERFHDRLTQLIHQYLARKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12691; Mature: 12691
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDSTVMLQIHHRLEPGCLGPDGVNHVEAFCGLAQKAMQQLSPGICRWQLEPRYDKRLAE CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHH MSYFLGAKQLTREQAGKYLQLFGEDIESFEERFHDRLTQLIHQYLARKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MEDSTVMLQIHHRLEPGCLGPDGVNHVEAFCGLAQKAMQQLSPGICRWQLEPRYDKRLAE CCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHH MSYFLGAKQLTREQAGKYLQLFGEDIESFEERFHDRLTQLIHQYLARKP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA