Click here to switch to the map view.

The map label for this gene is yciS [H]

Identifier: 119774873

GI number: 119774873

Start: 2128299

End: 2128640

Strand: Direct

Name: yciS [H]

Synonym: Sama_1738

Alternate gene names: 119774873

Gene position: 2128299-2128640 (Clockwise)

Preceding gene: 119774872

Following gene: 119774874

Centisome position: 49.42

GC content: 50.88

Gene sequence:

>342_bases
TTGGATAATCAGCCCATTGACATGCGTAAGGAGGCAGCCGTGAAAGGATTTTTTGTGGCCTTGGTCATTGCTCTGTTGTT
CGTATTGGCATTACTGCTTGGCTCACGCAATGAGCAGCTTGTCACCATCAACTATTTTGTCGCCCAGGGTGAGTTTCGAT
TGCCCGTGGTTCTCGCCAGCGTATTTTTCGCAGGATTCCTGCTGTGCTGGTGTTTTGCTGTGTACCACATTGGCAAACTC
AAGTATGCGCTGTCCCGGGCCAACCGGAAATTACAGAAACTCGAGCCACAGACCGCGACCAATCCGGCTTCTCTGGTTTC
TTCGGGTGAAGTGAAGTCCTGA

Upstream 100 bases:

>100_bases
GACGCTGTTAACGTCTAAGACACGTTGATTAAAAAAGCCTCCTTATTGGAGGCTTTTTTGTTTATCCGTACCACAGACAC
TGGTCAGCCAAGTGAAATTC

Downstream 100 bases:

>100_bases
TATGCTGGAAATTCTGTTTCTGCTGCTGCCCATTGCCGCCGGATACGGTTGGTATATGGGACGTCGCAGTTTACGTCAGA
ACCAGTATCACCAACGTAAA

Product: membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MDNQPIDMRKEAAVKGFFVALVIALLFVLALLLGSRNEQLVTINYFVAQGEFRLPVVLASVFFAGFLLCWCFAVYHIGKL
KYALSRANRKLQKLEPQTATNPASLVSSGEVKS

Sequences:

>Translated_113_residues
MDNQPIDMRKEAAVKGFFVALVIALLFVLALLLGSRNEQLVTINYFVAQGEFRLPVVLASVFFAGFLLCWCFAVYHIGKL
KYALSRANRKLQKLEPQTATNPASLVSSGEVKS
>Mature_113_residues
MDNQPIDMRKEAAVKGFFVALVIALLFVLALLLGSRNEQLVTINYFVAQGEFRLPVVLASVFFAGFLLCWCFAVYHIGKL
KYALSRANRKLQKLEPQTATNPASLVSSGEVKS

Specific function: Unknown

COG id: COG3771

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1222 [H]

Homologues:

Organism=Escherichia coli, GI1787535, Length=94, Percent_Identity=37.2340425531915, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010445 [H]

Pfam domain/function: PF06305 DUF1049 [H]

EC number: NA

Molecular weight: Translated: 12523; Mature: 12523

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNQPIDMRKEAAVKGFFVALVIALLFVLALLLGSRNEQLVTINYFVAQGEFRLPVVLAS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHH
VFFAGFLLCWCFAVYHIGKLKYALSRANRKLQKLEPQTATNPASLVSSGEVKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MDNQPIDMRKEAAVKGFFVALVIALLFVLALLLGSRNEQLVTINYFVAQGEFRLPVVLAS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHH
VFFAGFLLCWCFAVYHIGKLKYALSRANRKLQKLEPQTATNPASLVSSGEVKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]